Gene name: ZIP1
Reference locus (S288C): YDR285W
Gene biotype: protein_coding
Description: Transverse filament protein of the synaptonemal complex; required for normal levels of meiotic recombination and pairing between homologous chromosome during meiosis; required for meiotic recombination between non-allelc sites; potential Cdc28p substrate
Top 10 interactors (score): RED1 (0.982); PCH2 (0.955); ZIP2 (0.941); CST9 (0.937); SPO22 (0.935); MEK1 (0.93); SPO11 (0.905); MSH4 (0.901); ECM11 (0.896); NDT80 (0.891); SPO16 (0.89); DMC1 (0.89); DOT1 (0.888); HOP1 (0.885); MSH5 (0.885); REC8 (0.864); GMC2 (0.843); HFM1 (0.813); MND1 (0.788); MLH3 (0.786)
Homologues (species, bitscore): LAMA2 (Homo sapiens, 56.2); lama5 (Danio rerio, 50.1); lama3 (Xenopus tropicalis, 76.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:984426-987053:+ | gene-YDR285W_AKU4011 | rna-NM_001180593.1_AKU4011 | cds-NP_010571.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:144507-147134:- | gene-YDR285W_BG1 | rna-NM_001180593.1_BG1 | cds-NP_010571.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1011694-1014321:+ | gene-YDR285W_Bruggeman | rna-NM_001180593.1_Bruggeman | cds-NP_010571.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:998706-1001333:+ | gene-YDR285W_CAT1 | rna-NM_001180593.1_CAT1 | cds-NP_010571.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:978871-981498:+ | gene-YDR285W_CBS1585 | rna-NM_001180593.1_CBS1585 | cds-NP_010571.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:997234-999861:+ | gene-YDR285W_CBS436 | rna-NM_001180593.1_CBS436 | cds-NP_010571.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:975553-978180:+ | gene-YDR285W_CBS6412 | rna-NM_001180593.1_CBS6412 | cds-NP_010571.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:996791-999418:+ | gene-YDR285W_CBS6413 | rna-NM_001180593.1_CBS6413 | cds-NP_010571.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1031082-1033709:+ | gene-YDR285W_CENPK1137D | rna-NM_001180593.1_CENPK1137D | cds-NP_010571.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:982965-985592:+ | gene-YDR285W_EthanolRed | rna-NM_001180593.1_EthanolRed | cds-NP_010571.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:991167-993794:+ | gene-YDR285W_FaliES1 | rna-NM_001180593.1_FaliES1 | cds-NP_010571.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000130.1:8992-11619:+ | gene-YDR285W_JAY291 | rna-NM_001180593.1_JAY291 | cds-NP_010571.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:997210-999837:+ | gene-YDR285W_MUCL30387 | rna-NM_001180593.1_MUCL30387 | cds-NP_010571.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:984277-986904:+ | gene-YDR285W_MUCL30388 | rna-NM_001180593.1_MUCL30388 | cds-NP_010571.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:970677-973304:+ | gene-YDR285W_MUCL39482 | rna-NM_001180593.1_MUCL39482 | cds-NP_010571.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:910657-913284:+ | gene-YDR285W_MUCL42920 | rna-NM_001180593.1_MUCL42920 | cds-NP_010571.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1032359-1034986:+ | gene-YDR285W_NCIM3186 | rna-NM_001180593.1_NCIM3186 | cds-NP_010571.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:983968-986595:+ | gene-YDR285W_NCYC1407 | rna-NM_001180593.1_NCYC1407 | cds-NP_010571.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:994964-997591:+ | gene-YDR285W_PE2H3 | rna-NM_001180593.1_PE2H3 | cds-NP_010571.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1000549-1003176:+ | gene-YDR285W_PE2H4 | rna-NM_001180593.1_PE2H4 | cds-NP_010571.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1032436-1035063:+ | gene-YDR285W_S288C | rna-NM_001180593.1_S288C | cds-NP_010571.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:9171-11798:+ | gene-YDR285W_SA1 | rna-NM_001180593.1_SA1 | cds-NP_010571.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:995452-998079:+ | gene-YDR285W_ThermosaccDry | rna-NM_001180593.1_ThermosaccDry | cds-NP_010571.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1011390-1014017:+ | gene-YDR285W_VR1 | rna-NM_001180593.1_VR1 | cds-NP_010571.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:39576-42203:+ | gene-YDR285W_ZTW1 | rna-NM_001180593.1_ZTW1 | cds-NP_010571.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:990968-993598:+ | gene-YDR285W_Sparadoxus | rna-NM_001180593.1_Sparadoxus | cds-NP_010571.1_Sparadoxus | 86.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |