Gene name: YVC1
Reference locus (S288C): YOR087W
Gene biotype: protein_coding
Description: Calcium channel YVC1; Vacuolar cation channel; mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock
Top 10 interactors (score): CCH1 (0.969); PMC1 (0.963); MID1 (0.917); VCX1 (0.904); SPF1 (0.852); ECM7 (0.819); PMR1 (0.815); CRZ1 (0.75); GDT1 (0.698); VMA3 (0.697); CMD1 (0.696); YGL262W (0.671); TRM1 (0.667); FLC2 (0.65); YIL054W (0.617); YHR173C (0.617); YNL140C (0.615); FAB1 (0.613); VNX1 (0.61); ECM27 (0.574)
Homologues (species, bitscore): TRPC5 (Homo sapiens, 52.0); Trpc2 (Mus musculus, 53.5); LOC555897 (Danio rerio, 56.2); trpc4 (Xenopus tropicalis, 57.4); trp (Drosophila melanogaster, 51.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:472058-474085:+ | gene-YOR087W_AKU4011 | rna-NM_001183506.1_AKU4011 | cds-NP_014730.2_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:105241-107268:- | gene-YOR087W_BG1 | rna-NM_001183506.1_BG1 | cds-NP_014730.2_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:475375-477402:+ | gene-YOR087W_Bruggeman | rna-NM_001183506.1_Bruggeman | cds-NP_014730.2_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:473907-475934:+ | gene-YOR087W_CAT1 | rna-NM_001183506.1_CAT1 | cds-NP_014730.2_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:467350-469377:+ | gene-YOR087W_CBS1585 | rna-NM_001183506.1_CBS1585 | cds-NP_014730.2_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:472109-474136:+ | gene-YOR087W_CBS436 | rna-NM_001183506.1_CBS436 | cds-NP_014730.2_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:466091-468118:+ | gene-YOR087W_CBS6412 | rna-NM_001183506.1_CBS6412 | cds-NP_014730.2_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:473384-475411:+ | gene-YOR087W_CBS6413 | rna-NM_001183506.1_CBS6413 | cds-NP_014730.2_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:487733-489760:+ | gene-YOR087W_CENPK1137D | rna-NM_001183506.1_CENPK1137D | cds-NP_014730.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:468593-470620:+ | gene-YOR087W_EthanolRed | rna-NM_001183506.1_EthanolRed | cds-NP_014730.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:472100-474127:+ | gene-YOR087W_FaliES1 | rna-NM_001183506.1_FaliES1 | cds-NP_014730.2_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:85387-87414:- | gene-YOR087W_JAY291 | rna-NM_001183506.1_JAY291 | cds-NP_014730.2_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:479909-481936:+ | gene-YOR087W_MUCL30387 | rna-NM_001183506.1_MUCL30387 | cds-NP_014730.2_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:484217-486693:+ | gene-YOR087W_MUCL30388 | rna-NM_001183506.1_MUCL30388 | cds-NP_014730.2_MUCL30388 | 81.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:474984-477011:+ | gene-YOR087W_MUCL39482 | rna-NM_001183506.1_MUCL39482 | cds-NP_014730.2_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:490810-492837:+ | gene-YOR087W_MUCL42920 | rna-NM_001183506.1_MUCL42920 | cds-NP_014730.2_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:487596-489623:+ | gene-YOR087W_NCIM3186 | rna-NM_001183506.1_NCIM3186 | cds-NP_014730.2_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:481165-483192:+ | gene-YOR087W_NCYC1407 | rna-NM_001183506.1_NCYC1407 | cds-NP_014730.2_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:480180-482207:+ | gene-YOR087W_PE2H3 | rna-NM_001183506.1_PE2H3 | cds-NP_014730.2_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:490556-492583:+ | gene-YOR087W_PE2H4 | rna-NM_001183506.1_PE2H4 | cds-NP_014730.2_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:487707-489734:+ | gene-YOR087W_S288C | rna-NM_001183506.1_S288C | cds-NP_014730.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000098.1:33070-35097:- | gene-YOR087W_SA1 | rna-NM_001183506.1_SA1 | cds-NP_014730.2_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:471256-473283:+ | gene-YOR087W_ThermosaccDry | rna-NM_001183506.1_ThermosaccDry | cds-NP_014730.2_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:473100-475127:+ | gene-YOR087W_VR1 | rna-NM_001183506.1_VR1 | cds-NP_014730.2_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:205249-207276:+ | gene-YOR087W_ZTW1 | rna-NM_001183506.1_ZTW1 | cds-NP_014730.2_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:477019-479046:+ | gene-YOR087W_Sparadoxus | rna-NM_001183506.1_Sparadoxus | cds-NP_014730.2_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |