Gene name: YTM1
Reference locus (S288C): YOR272W
Gene biotype: protein_coding
Description: Ribosome biogenesis protein YTM1; Constituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Erb1p that is required for maturation of the large ribosomal subunit; has seven C-terminal WD repeats
Top 10 interactors (score): CBF5 (0.999); BRX1 (0.999); DIM1 (0.999); NOC2 (0.999); MAK16 (0.999); ENP1 (0.999); UTP6 (0.999); MPP10 (0.999); MDN1 (0.999); KRE33 (0.999); RLP7 (0.999); EMG1 (0.999); NOP4 (0.999); NOG1 (0.999); TIF6 (0.999); CIC1 (0.999); MAK21 (0.999); RRP5 (0.999); PUF6 (0.999); UTP4 (0.999)
Homologues (species, bitscore): WDR12 (Homo sapiens, 171.0); Wdr12 (Mus musculus, 173.7); wdr12 (Danio rerio, 184.1); wdr12 (Xenopus tropicalis, 185.3); CG6724 (Drosophila melanogaster, 146.4); tag-345 (Caenorhabditis elegans, 114.4); AT5G15550 (Arabidopsis thaliana, 181.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:823623-825005:+ | gene-YOR272W_AKU4011 | rna-NM_001183691.3_AKU4011 | cds-NP_014915.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:225588-226970:+ | gene-YOR272W_BG1 | rna-NM_001183691.3_BG1 | cds-NP_014915.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:809058-810440:+ | gene-YOR272W_Bruggeman | rna-NM_001183691.3_Bruggeman | cds-NP_014915.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:809729-811111:+ | gene-YOR272W_CAT1 | rna-NM_001183691.3_CAT1 | cds-NP_014915.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:806642-808024:+ | gene-YOR272W_CBS1585 | rna-NM_001183691.3_CBS1585 | cds-NP_014915.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:805290-806672:+ | gene-YOR272W_CBS436 | rna-NM_001183691.3_CBS436 | cds-NP_014915.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:803495-804877:+ | gene-YOR272W_CBS6412 | rna-NM_001183691.3_CBS6412 | cds-NP_014915.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:812352-813734:+ | gene-YOR272W_CBS6413 | rna-NM_001183691.3_CBS6413 | cds-NP_014915.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:832584-833966:+ | gene-YOR272W_CENPK1137D | rna-NM_001183691.3_CENPK1137D | cds-NP_014915.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:799750-801132:+ | gene-YOR272W_EthanolRed | rna-NM_001183691.3_EthanolRed | cds-NP_014915.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:805149-806531:+ | gene-YOR272W_FaliES1 | rna-NM_001183691.3_FaliES1 | cds-NP_014915.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:20383-21765:- | gene-YOR272W_JAY291 | rna-NM_001183691.3_JAY291 | cds-NP_014915.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:813295-814677:+ | gene-YOR272W_MUCL30387 | rna-NM_001183691.3_MUCL30387 | cds-NP_014915.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:821271-822653:+ | gene-YOR272W_MUCL30388 | rna-NM_001183691.3_MUCL30388 | cds-NP_014915.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:813987-815369:+ | gene-YOR272W_MUCL39482 | rna-NM_001183691.3_MUCL39482 | cds-NP_014915.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:823474-824856:+ | gene-YOR272W_MUCL42920 | rna-NM_001183691.3_MUCL42920 | cds-NP_014915.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:832702-834084:+ | gene-YOR272W_NCIM3186 | rna-NM_001183691.3_NCIM3186 | cds-NP_014915.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:814193-815575:+ | gene-YOR272W_NCYC1407 | rna-NM_001183691.3_NCYC1407 | cds-NP_014915.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:813270-814652:+ | gene-YOR272W_PE2H3 | rna-NM_001183691.3_PE2H3 | cds-NP_014915.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:823647-825029:+ | gene-YOR272W_PE2H4 | rna-NM_001183691.3_PE2H4 | cds-NP_014915.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:832813-834195:+ | gene-YOR272W_S288C | rna-NM_001183691.3_S288C | cds-NP_014915.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:242831-244213:+ | gene-YOR272W_SA1 | rna-NM_001183691.3_SA1 | cds-NP_014915.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:804332-805714:+ | gene-YOR272W_ThermosaccDry | rna-NM_001183691.3_ThermosaccDry | cds-NP_014915.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:867710-869092:+ | gene-YOR272W_VR1 | rna-NM_001183691.3_VR1 | cds-NP_014915.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:537221-538603:+ | gene-YOR272W_ZTW1 | rna-NM_001183691.3_ZTW1 | cds-NP_014915.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:809974-811353:+ | gene-YOR272W_Sparadoxus | rna-NM_001183691.3_Sparadoxus | cds-NP_014915.3_Sparadoxus | 92.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |