Gene name: YTH1
Reference locus (S288C): YPR107C
Gene biotype: protein_coding
Description: mRNA 3'-end-processing protein YTH1; Essential RNA-binding component of cleavage and polyadenylation factor; contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): MPE1 (0.999); RNA15 (0.999); CFT2 (0.999); PAP1 (0.999); PTA1 (0.999); PTI1 (0.999); REF2 (0.999); YSH1 (0.999); SYC1 (0.999); RNA14 (0.999); SWD2 (0.999); CFT1 (0.999); FIP1 (0.999); PFS2 (0.999); SSU72 (0.999); CLP1 (0.998); PCF11 (0.997); GLC7 (0.99); HRP1 (0.947); SEC13 (0.945)
Homologues (species, bitscore): CPSF4 (Homo sapiens, 138.7); Cpsf4l (Mus musculus, 102.4); cpsf4 (Danio rerio, 139.4); cpsf4l (Xenopus tropicalis, 134.8); Clp (Drosophila melanogaster, 130.2); cpsf-4 (Caenorhabditis elegans, 132.5); CPSF30 (Arabidopsis thaliana, 79.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:713271-713897:- | gene-YPR107C_AKU4011 | rna-NM_001184204.1_AKU4011 | cds-NP_015432.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:183943-184569:+ | gene-YPR107C_BG1 | rna-NM_001184204.1_BG1 | cds-NP_015432.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:791280-791906:- | gene-YPR107C_Bruggeman | rna-NM_001184204.1_Bruggeman | cds-NP_015432.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:835583-836209:- | gene-YPR107C_CAT1 | rna-NM_001184204.1_CAT1 | cds-NP_015432.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:717528-718154:- | gene-YPR107C_CBS1585 | rna-NM_001184204.1_CBS1585 | cds-NP_015432.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:731825-732451:- | gene-YPR107C_CBS436 | rna-NM_001184204.1_CBS436 | cds-NP_015432.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:719764-720390:- | gene-YPR107C_CBS6412 | rna-NM_001184204.1_CBS6412 | cds-NP_015432.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:714485-715111:- | gene-YPR107C_CBS6413 | rna-NM_001184204.1_CBS6413 | cds-NP_015432.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:741423-742049:- | gene-YPR107C_CENPK1137D | rna-NM_001184204.1_CENPK1137D | cds-NP_015432.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1039885-1040511:- | gene-YPR107C_EthanolRed | rna-NM_001184204.1_EthanolRed | cds-NP_015432.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:719432-720058:- | gene-YPR107C_FaliES1 | rna-NM_001184204.1_FaliES1 | cds-NP_015432.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000436.1:10194-10820:- | gene-YPR107C_JAY291 | rna-NM_001184204.1_JAY291 | cds-NP_015432.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:732538-733164:- | gene-YPR107C_MUCL30387 | rna-NM_001184204.1_MUCL30387 | cds-NP_015432.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:731231-731857:- | gene-YPR107C_MUCL30388 | rna-NM_001184204.1_MUCL30388 | cds-NP_015432.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:710035-710661:- | gene-YPR107C_MUCL39482 | rna-NM_001184204.1_MUCL39482 | cds-NP_015432.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:773130-773756:- | gene-YPR107C_MUCL42920 | rna-NM_001184204.1_MUCL42920 | cds-NP_015432.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:741421-742047:- | gene-YPR107C_NCIM3186 | rna-NM_001184204.1_NCIM3186 | cds-NP_015432.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:718629-719255:- | gene-YPR107C_NCYC1407 | rna-NM_001184204.1_NCYC1407 | cds-NP_015432.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:724869-725495:- | gene-YPR107C_PE2H3 | rna-NM_001184204.1_PE2H3 | cds-NP_015432.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:724517-725143:- | gene-YPR107C_PE2H4 | rna-NM_001184204.1_PE2H4 | cds-NP_015432.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:741438-742064:- | gene-YPR107C_S288C | rna-NM_001184204.1_S288C | cds-NP_015432.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:39554-40180:- | gene-YPR107C_SA1 | rna-NM_001184204.1_SA1 | cds-NP_015432.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:718877-719503:- | gene-YPR107C_ThermosaccDry | rna-NM_001184204.1_ThermosaccDry | cds-NP_015432.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:735536-736162:- | gene-YPR107C_VR1 | rna-NM_001184204.1_VR1 | cds-NP_015432.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:717927-718553:- | gene-YPR107C_ZTW1 | rna-NM_001184204.1_ZTW1 | cds-NP_015432.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:718863-719489:- | gene-YPR107C_Sparadoxus | rna-NM_001184204.1_Sparadoxus | cds-NP_015432.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |