Gene name: YSY6
Reference locus (S288C): YBR162W-A
Gene biotype: protein_coding
Description: Protein of unknown function; expression suppresses a secretory pathway mutation in E. coli; has similarity to the mammalian RAMP4 protein involved in secretion
Top 10 interactors (score): SBH2 (0.854); ERD2 (0.829); GET3 (0.794); FMP32 (0.771); ENV10 (0.718); SRP101 (0.691); KAR2 (0.681); GET1 (0.65); SBH1 (0.616); SEC22 (0.612); SGT2 (0.605); LHS1 (0.604); FRT1 (0.572); SEC72 (0.571); GET2 (0.569); SCEI (0.561); SND1 (0.56); SSS1 (0.548); SED5 (0.543); SNC2 (0.534)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:548104-548301:+ | gene-YBR162W-A_AKU4011 | rna-NM_001180059.1_AKU4011 | cds-NP_009721.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:538616-538813:+ | gene-YBR162W-A_BG1 | rna-NM_001180059.1_BG1 | cds-NP_009721.1_BG1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:551127-551324:+ | gene-YBR162W-A_Bruggeman | rna-NM_001180059.1_Bruggeman | cds-NP_009721.1_Bruggeman | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:445243-445440:+ | gene-YBR162W-A_CAT1 | rna-NM_001180059.1_CAT1 | cds-NP_009721.1_CAT1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:539887-540084:+ | gene-YBR162W-A_CBS1585 | rna-NM_001180059.1_CBS1585 | cds-NP_009721.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:547969-548166:+ | gene-YBR162W-A_CBS436 | rna-NM_001180059.1_CBS436 | cds-NP_009721.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:637370-637567:+ | gene-YBR162W-A_CBS6412 | rna-NM_001180059.1_CBS6412 | cds-NP_009721.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:545442-545639:+ | gene-YBR162W-A_CBS6413 | rna-NM_001180059.1_CBS6413 | cds-NP_009721.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:559031-559228:+ | gene-YBR162W-A_CENPK1137D | rna-NM_001180059.1_CENPK1137D | cds-NP_009721.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:673950-674147:+ | gene-YBR162W-A_EthanolRed | rna-NM_001180059.1_EthanolRed | cds-NP_009721.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:564182-564379:+ | gene-YBR162W-A_FaliES1 | rna-NM_001180059.1_FaliES1 | cds-NP_009721.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000310.1:4012-4209:+ | gene-YBR162W-A_JAY291 | rna-NM_001180059.1_JAY291 | cds-NP_009721.1_JAY291 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:552781-552978:+ | gene-YBR162W-A_MUCL30387 | rna-NM_001180059.1_MUCL30387 | cds-NP_009721.1_MUCL30387 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:552066-552263:+ | gene-YBR162W-A_MUCL30388 | rna-NM_001180059.1_MUCL30388 | cds-NP_009721.1_MUCL30388 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:538259-538456:+ | gene-YBR162W-A_MUCL39482 | rna-NM_001180059.1_MUCL39482 | cds-NP_009721.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:548182-548379:+ | gene-YBR162W-A_MUCL42920 | rna-NM_001180059.1_MUCL42920 | cds-NP_009721.1_MUCL42920 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:565028-565225:+ | gene-YBR162W-A_NCIM3186 | rna-NM_001180059.1_NCIM3186 | cds-NP_009721.1_NCIM3186 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:540827-541024:+ | gene-YBR162W-A_NCYC1407 | rna-NM_001180059.1_NCYC1407 | cds-NP_009721.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:553486-553683:+ | gene-YBR162W-A_PE2H3 | rna-NM_001180059.1_PE2H3 | cds-NP_009721.1_PE2H3 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:551162-551359:+ | gene-YBR162W-A_PE2H4 | rna-NM_001180059.1_PE2H4 | cds-NP_009721.1_PE2H4 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:565231-565428:+ | gene-YBR162W-A_S288C | rna-NM_001180059.1_S288C | cds-NP_009721.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:86479-86676:+ | gene-YBR162W-A_SA1 | rna-NM_001180059.1_SA1 | cds-NP_009721.1_SA1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:563192-563389:+ | gene-YBR162W-A_ThermosaccDry | rna-NM_001180059.1_ThermosaccDry | cds-NP_009721.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:544639-544836:+ | gene-YBR162W-A_VR1 | rna-NM_001180059.1_VR1 | cds-NP_009721.1_VR1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:538308-538505:+ | gene-YBR162W-A_ZTW1 | rna-NM_001180059.1_ZTW1 | cds-NP_009721.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:575583-575780:+ | gene-YBR162W-A_Sparadoxus | rna-NM_001180059.1_Sparadoxus | cds-NP_009721.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |