Gene name: YSR3
Reference locus (S288C): YKR053C
Gene biotype: protein_coding
Description: Dihydrosphingosine 1-phosphate phosphatase; membrane protein involved in sphingolipid metabolism; YSR3 has a paralog, LCB3, that arose from the whole genome duplication
Top 10 interactors (score): LCB5 (0.995); LCB4 (0.994); DPL1 (0.985); YDC1 (0.981); LAG1 (0.976); LAC1 (0.973); LCB3 (0.954); SUR2 (0.948); TSC10 (0.909); YPC1 (0.896); ISC1 (0.833); LCB1 (0.714); KEI1 (0.692); IPT1 (0.66); RCN2 (0.562); CSG2 (0.526); FMP45 (0.513); CEM1 (0.511); KEG1 (0.497); HOR7 (0.483)
Homologues (species, bitscore): SGPP2 (Homo sapiens, 76.6); Sgpp2 (Mus musculus, 78.6); SGPP2 (Danio rerio, 73.9); SGPP2 (Xenopus tropicalis, 74.7); AT3G58490 (Arabidopsis thaliana, 95.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:519364-520578:- | gene-YKR053C_AKU4011 | rna-NM_001179843.3_AKU4011 | cds-NP_012979.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:122948-124162:+ | gene-YKR053C_BG1 | rna-NM_001179843.3_BG1 | cds-NP_012979.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:541541-542755:- | gene-YKR053C_Bruggeman | rna-NM_001179843.3_Bruggeman | cds-NP_012979.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:537965-539179:- | gene-YKR053C_CAT1 | rna-NM_001179843.3_CAT1 | cds-NP_012979.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:532104-533318:- | gene-YKR053C_CBS1585 | rna-NM_001179843.3_CBS1585 | cds-NP_012979.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:530936-532150:- | gene-YKR053C_CBS436 | rna-NM_001179843.3_CBS436 | cds-NP_012979.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:516282-517496:- | gene-YKR053C_CBS6412 | rna-NM_001179843.3_CBS6412 | cds-NP_012979.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:531924-533138:- | gene-YKR053C_CBS6413 | rna-NM_001179843.3_CBS6413 | cds-NP_012979.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:533723-534937:- | gene-YKR053C_CENPK1137D | rna-NM_001179843.3_CENPK1137D | cds-NP_012979.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:529685-530899:- | gene-YKR053C_EthanolRed | rna-NM_001179843.3_EthanolRed | cds-NP_012979.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:532822-534036:- | gene-YKR053C_FaliES1 | rna-NM_001179843.3_FaliES1 | cds-NP_012979.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:19765-20979:+ | gene-YKR053C_JAY291 | rna-NM_001179843.3_JAY291 | cds-NP_012979.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:541939-543153:- | gene-YKR053C_MUCL30387 | rna-NM_001179843.3_MUCL30387 | cds-NP_012979.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:536301-537515:- | gene-YKR053C_MUCL30388 | rna-NM_001179843.3_MUCL30388 | cds-NP_012979.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:531432-532646:- | gene-YKR053C_MUCL39482 | rna-NM_001179843.3_MUCL39482 | cds-NP_012979.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:537455-538669:- | gene-YKR053C_MUCL42920 | rna-NM_001179843.3_MUCL42920 | cds-NP_012979.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:534056-535270:- | gene-YKR053C_NCIM3186 | rna-NM_001179843.3_NCIM3186 | cds-NP_012979.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:531646-532860:- | gene-YKR053C_NCYC1407 | rna-NM_001179843.3_NCYC1407 | cds-NP_012979.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:557012-558226:- | gene-YKR053C_PE2H3 | rna-NM_001179843.3_PE2H3 | cds-NP_012979.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:541407-542621:- | gene-YKR053C_PE2H4 | rna-NM_001179843.3_PE2H4 | cds-NP_012979.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:534067-535281:- | gene-YKR053C_S288C | rna-NM_001179843.3_S288C | cds-NP_012979.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000093.1:17168-18382:- | gene-YKR053C_SA1 | rna-NM_001179843.3_SA1 | cds-NP_012979.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:532061-533275:- | gene-YKR053C_ThermosaccDry | rna-NM_001179843.3_ThermosaccDry | cds-NP_012979.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:532080-533294:- | gene-YKR053C_VR1 | rna-NM_001179843.3_VR1 | cds-NP_012979.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:530050-531264:- | gene-YKR053C_ZTW1 | rna-NM_001179843.3_ZTW1 | cds-NP_012979.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:555435-556649:- | gene-YKR053C_Sparadoxus | rna-NM_001179843.3_Sparadoxus | cds-NP_012979.3_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |