Gene name: YSF3
Reference locus (S288C): YNL138W-A
Gene biotype: protein_coding
Description: RDS3 complex subunit 10; Component of the SF3b subcomplex of the U2 snRNP; essential protein required for splicing and for assembly of SF3b
Top 10 interactors (score): RDS3 (0.999); HSH155 (0.999); HSH49 (0.999); SMD2 (0.999); SME1 (0.999); PRP21 (0.999); PRP11 (0.999); CUS1 (0.999); RSE1 (0.999); SMX2 (0.999); MSL1 (0.999); LEA1 (0.999); SMD3 (0.998); BUD31 (0.998); IST3 (0.998); PRP9 (0.997); SMX3 (0.997); SMB1 (0.995); CWC15 (0.994); SNU66 (0.994)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:359718-360097:+ | gene-YNL138W-A_AKU4011 | rna-NM_001184519.1_AKU4011 | cds-NP_878153.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:263710-264089:+ | gene-YNL138W-A_BG1 | rna-NM_001184519.1_BG1 | cds-NP_878153.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:369815-370194:+ | gene-YNL138W-A_Bruggeman | rna-NM_001184519.1_Bruggeman | cds-NP_878153.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:413011-413390:+ | gene-YNL138W-A_CAT1 | rna-NM_001184519.1_CAT1 | cds-NP_878153.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:360337-360716:+ | gene-YNL138W-A_CBS1585 | rna-NM_001184519.1_CBS1585 | cds-NP_878153.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:428732-429111:+ | gene-YNL138W-A_CBS436 | rna-NM_001184519.1_CBS436 | cds-NP_878153.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:355791-356170:+ | gene-YNL138W-A_CBS6412 | rna-NM_001184519.1_CBS6412 | cds-NP_878153.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:356755-357134:+ | gene-YNL138W-A_CBS6413 | rna-NM_001184519.1_CBS6413 | cds-NP_878153.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:359885-360264:+ | gene-YNL138W-A_CENPK1137D | rna-NM_001184519.1_CENPK1137D | cds-NP_878153.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:356709-357088:+ | gene-YNL138W-A_EthanolRed | rna-NM_001184519.1_EthanolRed | cds-NP_878153.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:352611-352990:+ | gene-YNL138W-A_FaliES1 | rna-NM_001184519.1_FaliES1 | cds-NP_878153.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000021.1:8991-9370:+ | gene-YNL138W-A_JAY291 | rna-NM_001184519.1_JAY291 | cds-NP_878153.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:365830-366209:+ | gene-YNL138W-A_MUCL30387 | rna-NM_001184519.1_MUCL30387 | cds-NP_878153.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:400947-401326:+ | gene-YNL138W-A_MUCL30388 | rna-NM_001184519.1_MUCL30388 | cds-NP_878153.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:357617-357996:+ | gene-YNL138W-A_MUCL39482 | rna-NM_001184519.1_MUCL39482 | cds-NP_878153.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:360612-360991:+ | gene-YNL138W-A_MUCL42920 | rna-NM_001184519.1_MUCL42920 | cds-NP_878153.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:366002-366381:+ | gene-YNL138W-A_NCIM3186 | rna-NM_001184519.1_NCIM3186 | cds-NP_878153.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:359749-360128:+ | gene-YNL138W-A_NCYC1407 | rna-NM_001184519.1_NCYC1407 | cds-NP_878153.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:356748-357127:+ | gene-YNL138W-A_PE2H3 | rna-NM_001184519.1_PE2H3 | cds-NP_878153.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:356136-356515:+ | gene-YNL138W-A_PE2H4 | rna-NM_001184519.1_PE2H4 | cds-NP_878153.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:366033-366412:+ | gene-YNL138W-A_S288C | rna-NM_001184519.1_S288C | cds-NP_878153.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:47101-47480:- | gene-YNL138W-A_SA1 | rna-NM_001184519.1_SA1 | cds-NP_878153.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:353465-353844:+ | gene-YNL138W-A_ThermosaccDry | rna-NM_001184519.1_ThermosaccDry | cds-NP_878153.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:372128-372507:+ | gene-YNL138W-A_VR1 | rna-NM_001184519.1_VR1 | cds-NP_878153.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:263299-263678:+ | gene-YNL138W-A_ZTW1 | rna-NM_001184519.1_ZTW1 | cds-NP_878153.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:364260-364640:+ | gene-YNL138W-A_Sparadoxus | rna-NM_001184519.1_Sparadoxus | cds-NP_878153.1_Sparadoxus | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |