Gene name: YSC84
Reference locus (S288C): YHR016C
Gene biotype: protein_coding
Description: Actin-binding protein; involved in bundling of actin filaments and endocytosis of actin cortical patches; activity stimulated by Las17p; contains SH3 domain similar to Rvs167p; YSC84 has a paralog, LSB3, that arose from the whole genome duplication
Top 10 interactors (score): LSB3 (0.999); CUE5 (0.999); SLA1 (0.988); LAS17 (0.978); ACT1 (0.923); BBC1 (0.92); ABP1 (0.906); BSP1 (0.897); BZZ1 (0.896); LSB5 (0.896); LDB17 (0.89); MYO3 (0.875); GTS1 (0.874); GYL1 (0.858); MYO5 (0.847); SLA2 (0.814); VRP1 (0.806); ACF2 (0.805); AIM3 (0.794); BOI2 (0.794)
Homologues (species, bitscore): SH3YL1 (Homo sapiens, 255.0); Sh3yl1 (Mus musculus, 250.0); sh3yl1 (Danio rerio, 251.1); sh3yl1 (Xenopus tropicalis, 218.4); POSH (Drosophila melanogaster, 65.1); itsn-1 (Caenorhabditis elegans, 64.3); AT3G43230 (Arabidopsis thaliana, 167.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:125422-126996:- | gene-YHR016C_AKU4011 | rna-NM_001179146.1_AKU4011 | cds-NP_011880.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:45332-46906:- | gene-YHR016C_BG1 | rna-NM_001179146.1_BG1 | cds-NP_011880.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:132000-133574:- | gene-YHR016C_Bruggeman | rna-NM_001179146.1_Bruggeman | cds-NP_011880.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:126585-128159:- | gene-YHR016C_CAT1 | rna-NM_001179146.1_CAT1 | cds-NP_011880.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:125755-127329:- | gene-YHR016C_CBS1585 | rna-NM_001179146.1_CBS1585 | cds-NP_011880.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:119091-120665:- | gene-YHR016C_CBS436 | rna-NM_001179146.1_CBS436 | cds-NP_011880.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:125445-127019:- | gene-YHR016C_CBS6412 | rna-NM_001179146.1_CBS6412 | cds-NP_011880.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:125088-126662:- | gene-YHR016C_CBS6413 | rna-NM_001179146.1_CBS6413 | cds-NP_011880.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:130151-131725:- | gene-YHR016C_CENPK1137D | rna-NM_001179146.1_CENPK1137D | cds-NP_011880.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:124968-126542:- | gene-YHR016C_EthanolRed | rna-NM_001179146.1_EthanolRed | cds-NP_011880.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:125947-127521:- | gene-YHR016C_FaliES1 | rna-NM_001179146.1_FaliES1 | cds-NP_011880.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000424.1:7906-9480:+ | gene-YHR016C_JAY291 | rna-NM_001179146.1_JAY291 | cds-NP_011880.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:132007-133581:- | gene-YHR016C_MUCL30387 | rna-NM_001179146.1_MUCL30387 | cds-NP_011880.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:132492-134066:- | gene-YHR016C_MUCL30388 | rna-NM_001179146.1_MUCL30388 | cds-NP_011880.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:124782-126356:- | gene-YHR016C_MUCL39482 | rna-NM_001179146.1_MUCL39482 | cds-NP_011880.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:130311-131885:- | gene-YHR016C_MUCL42920 | rna-NM_001179146.1_MUCL42920 | cds-NP_011880.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:136763-138337:- | gene-YHR016C_NCIM3186 | rna-NM_001179146.1_NCIM3186 | cds-NP_011880.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:124196-125770:- | gene-YHR016C_NCYC1407 | rna-NM_001179146.1_NCYC1407 | cds-NP_011880.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:126761-128335:- | gene-YHR016C_PE2H3 | rna-NM_001179146.1_PE2H3 | cds-NP_011880.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:134202-135776:- | gene-YHR016C_PE2H4 | rna-NM_001179146.1_PE2H4 | cds-NP_011880.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:136881-138455:- | gene-YHR016C_S288C | rna-NM_001179146.1_S288C | cds-NP_011880.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:8054-9628:+ | gene-YHR016C_SA1 | rna-NM_001179146.1_SA1 | cds-NP_011880.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:127036-128610:- | gene-YHR016C_ThermosaccDry | rna-NM_001179146.1_ThermosaccDry | cds-NP_011880.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:132833-134407:- | gene-YHR016C_VR1 | rna-NM_001179146.1_VR1 | cds-NP_011880.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:118273-119847:- | gene-YHR016C_ZTW1 | rna-NM_001179146.1_ZTW1 | cds-NP_011880.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:125104-126677:- | gene-YHR016C_Sparadoxus | rna-NM_001179146.1_Sparadoxus | cds-NP_011880.1_Sparadoxus | 89.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |