YRF1-7 (YPL283C)

Gene profile

Gene name: YRF1-7
Reference locus (S288C): YPL283C
Gene biotype: protein_coding

Description: Y' element ATP-dependent helicase protein 1 copy 3; Helicase encoded by the Y' element of subtelomeric regions; highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p

Top 10 interactors (score): YPL283W-A (0.919); YPL283W-B (0.919); YGR296C-A (0.916); YER190C-B (0.916); YLL066C (0.873); YRF1-5 (0.873); YRF1-4 (0.873); YRF1-2 (0.873); YBL113C (0.873); YLL067C (0.873); YJL225C (0.873); YIL177C (0.873); YHR218W (0.873); YRF1-6 (0.873); YEL077C (0.873); YML133C (0.873); YRF1-1 (0.872); YHL050C (0.872); YRF1-3 (0.872); YHR219W (0.872)

Homologues (species, bitscore): EIF4A1 (Homo sapiens, 51.2); Eif4a1 (Mus musculus, 51.2); mia3 (Danio rerio, 57.0); eif4a1 (Xenopus tropicalis, 51.2); CG15765 (Drosophila melanogaster, 73.6); inf-1 (Caenorhabditis elegans, 52.4)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011825.1:263-5990:- gene-YPL283C_NCIM3186 rna-NM_001184097.1_NCIM3186 cds-NP_015040.1_NCIM3186 99.4 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:280-6007:- gene-YPL283C_S288C rna-NM_001184097.1_S288C cds-NP_015040.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005468.1:1-877:- gene-YPL283C_VR1 rna-NM_001184097.1_VR1 cds-NP_015040.1_VR1 8.8 15.7 Unannotated 1 1 0 False False True False False

Additional files