Gene name: YRF1-7
Reference locus (S288C): YPL283C
Gene biotype: protein_coding
Description: Y' element ATP-dependent helicase protein 1 copy 3; Helicase encoded by the Y' element of subtelomeric regions; highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p
Top 10 interactors (score): YPL283W-A (0.919); YPL283W-B (0.919); YGR296C-A (0.916); YER190C-B (0.916); YLL066C (0.873); YRF1-5 (0.873); YRF1-4 (0.873); YRF1-2 (0.873); YBL113C (0.873); YLL067C (0.873); YJL225C (0.873); YIL177C (0.873); YHR218W (0.873); YRF1-6 (0.873); YEL077C (0.873); YML133C (0.873); YRF1-1 (0.872); YHL050C (0.872); YRF1-3 (0.872); YHR219W (0.872)
Homologues (species, bitscore): EIF4A1 (Homo sapiens, 51.2); Eif4a1 (Mus musculus, 51.2); mia3 (Danio rerio, 57.0); eif4a1 (Xenopus tropicalis, 51.2); CG15765 (Drosophila melanogaster, 73.6); inf-1 (Caenorhabditis elegans, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:263-5990:- | gene-YPL283C_NCIM3186 | rna-NM_001184097.1_NCIM3186 | cds-NP_015040.1_NCIM3186 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:280-6007:- | gene-YPL283C_S288C | rna-NM_001184097.1_S288C | cds-NP_015040.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:1-877:- | gene-YPL283C_VR1 | rna-NM_001184097.1_VR1 | cds-NP_015040.1_VR1 | 8.8 | 15.7 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |