YRF1-6 (YNL339C)

Gene profile

Gene name: YRF1-6
Reference locus (S288C): YNL339C
Gene biotype: protein_coding

Description: Helicase encoded by the Y' element of subtelomeric regions; highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p

Top 10 interactors (score): YLR464W (0.988); YRF1-5 (0.988); YLL067C (0.975); YHL050C (0.975); YHR218W (0.969); YRF1-4 (0.969); YJL225C (0.922); YML133C (0.919); YNL339W-A (0.918); YNL339W-B (0.918); YIL177C (0.907); YLR462W (0.905); YBL112C (0.901); YEL077C (0.873); YBL113C (0.873); YRF1-7 (0.873); YRF1-3 (0.873); YBL111C (0.873); YLL066C (0.873); YRF1-2 (0.873)

Homologues (species, bitscore): EIF4A1 (Homo sapiens, 51.2); Eif4a1 (Mus musculus, 51.2); mia3 (Danio rerio, 57.0); eif4a1 (Xenopus tropicalis, 51.2); CG15765 (Drosophila melanogaster, 73.6); inf-1 (Caenorhabditis elegans, 52.4)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011823.1:340-6067:- gene-YNL339C_NCIM3186 rna-NM_001183177.1_NCIM3186 cds-NP_014060.1_NCIM3186 100.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001146.8:371-6098:- gene-YNL339C_S288C rna-NM_001183177.1_S288C cds-NP_014060.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000027.1:1-476:- gene-YNL339C_VR1 rna-NM_001183177.1_VR1 cds-NP_014060.1_VR1 8.4 8.5 Mismatch 1 1 0 False False True False False

Additional files