YRF1-5 (YLR467W)

Gene profile

Gene name: YRF1-5
Reference locus (S288C): YLR467W
Gene biotype: protein_coding

Description: Helicase encoded by the Y' element of subtelomeric regions; highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p

Top 10 interactors (score): YLR464W (0.988); YRF1-6 (0.988); YRF1-4 (0.988); YLL067C (0.988); YHL050C (0.975); YHR218W (0.969); YML133C (0.922); YJL225C (0.919); YIL177C (0.907); YDR545C-A (0.902); YLR462W (0.9); YLR467C-A (0.88); YBL112C (0.876); YRF1-3 (0.873); YBL113C (0.873); YRF1-7 (0.873); YEL077C (0.873); YLL066C (0.873); YRF1-2 (0.873); YRF1-1 (0.872)

Homologues (species, bitscore): EIF4A1 (Homo sapiens, 51.2); Eif4a1 (Mus musculus, 51.2); mia3 (Danio rerio, 57.4); eif4a1 (Xenopus tropicalis, 51.2); CG15765 (Drosophila melanogaster, 72.8); inf-1 (Caenorhabditis elegans, 52.8)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:1085362-1090752:+ gene-YLR467W_NCIM3186 rna-NM_001182355.3_NCIM3186 cds-NP_013572.3_NCIM3186 99.9 100.0 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994150.1:711631-716614:+ gene-YLR467W_PE2H3 rna-NM_001182355.3_PE2H3 cds-NP_013572.3_PE2H3 87.6 92.2 Unannotated 1 1 0 False False False True False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:1072508-1077898:+ gene-YLR467W_S288C rna-NM_001182355.3_S288C cds-NP_013572.3_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047489.1:344859-350270:+ gene-YLR467W_Sparadoxus rna-NM_001182355.3_Sparadoxus cds-NP_013572.3_Sparadoxus 97.2 99.9 Mismatch 1 1 1 False True False False False

Additional files