Gene name: YRF1-5
Reference locus (S288C): YLR467W
Gene biotype: protein_coding
Description: Helicase encoded by the Y' element of subtelomeric regions; highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p
Top 10 interactors (score): YLR464W (0.988); YRF1-6 (0.988); YRF1-4 (0.988); YLL067C (0.988); YHL050C (0.975); YHR218W (0.969); YML133C (0.922); YJL225C (0.919); YIL177C (0.907); YDR545C-A (0.902); YLR462W (0.9); YLR467C-A (0.88); YBL112C (0.876); YRF1-3 (0.873); YBL113C (0.873); YRF1-7 (0.873); YEL077C (0.873); YLL066C (0.873); YRF1-2 (0.873); YRF1-1 (0.872)
Homologues (species, bitscore): EIF4A1 (Homo sapiens, 51.2); Eif4a1 (Mus musculus, 51.2); mia3 (Danio rerio, 57.4); eif4a1 (Xenopus tropicalis, 51.2); CG15765 (Drosophila melanogaster, 72.8); inf-1 (Caenorhabditis elegans, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1085362-1090752:+ | gene-YLR467W_NCIM3186 | rna-NM_001182355.3_NCIM3186 | cds-NP_013572.3_NCIM3186 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:711631-716614:+ | gene-YLR467W_PE2H3 | rna-NM_001182355.3_PE2H3 | cds-NP_013572.3_PE2H3 | 87.6 | 92.2 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1072508-1077898:+ | gene-YLR467W_S288C | rna-NM_001182355.3_S288C | cds-NP_013572.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:344859-350270:+ | gene-YLR467W_Sparadoxus | rna-NM_001182355.3_Sparadoxus | cds-NP_013572.3_Sparadoxus | 97.2 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |