Gene name: YRF1-4
Reference locus (S288C): YLR466W
Gene biotype: protein_coding
Description: Y' element ATP-dependent helicase protein 1 copy 4; Helicase encoded by the Y' element of subtelomeric regions; highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p
Top 10 interactors (score): YRF1-5 (0.988); YLR462W (0.985); YLL067C (0.969); YHR218W (0.969); YRF1-6 (0.969); YHL050C (0.941); YLR464W (0.928); L9001 (0.925); BSC3 (0.92); YJL225C (0.917); YML133C (0.916); YIL177C (0.915); YBL112C (0.908); YLL066C (0.892); YBL113C (0.873); YEL077C (0.873); YRF1-7 (0.873); YRF1-3 (0.873); YRF1-2 (0.873); YRF1-1 (0.872)
Homologues (species, bitscore): EIF4A1 (Homo sapiens, 50.8); Eif4a1 (Mus musculus, 50.8); eif4a2 (Danio rerio, 50.4); eif4a1 (Xenopus tropicalis, 51.2); CG15765 (Drosophila melanogaster, 70.9); inf-1 (Caenorhabditis elegans, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:1010-4792:- | gene-YLR466W_Bruggeman | rna-NM_001182354.3_Bruggeman | cds-NP_013571.3_Bruggeman | 68.3 | 86.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:1037257-1038465:+ | gene-YLR466W_CBS436 | rna-NM_001182354.3_CBS436 | cds-NP_013571.3_CBS436 | 28.3 | 28.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | JH711437.1:1-356:+ | gene-YLR466W_CENPK1137D | rna-NM_001182354.3_CENPK1137D | cds-NP_013571.3_CENPK1137D | 8.5 | 8.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000249.1:1-366:+ | gene-YLR466W_JAY291 | rna-NM_001182354.3_JAY291 | cds-NP_013571.3_JAY291 | 8.7 | 8.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:1422-2403:- | gene-YLR466W_MUCL30388 | rna-NM_001182354.3_MUCL30388 | cds-NP_013571.3_MUCL30388 | 20.2 | 21.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1067061-1071209:+ | gene-YLR466W_NCIM3186 | rna-NM_001182354.3_NCIM3186 | cds-NP_013571.3_NCIM3186 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1082701-1082932:+ | gene-YLR466W_PE2H4 | rna-NM_001182354.3_PE2H4 | cds-NP_013571.3_PE2H4 | 5.4 | 5.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1067087-1071235:+ | gene-YLR466W_S288C | rna-NM_001182354.3_S288C | cds-NP_013571.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000179.1:1-876:- | gene-YLR466W_SA1 | rna-NM_001182354.3_SA1 | cds-NP_013571.3_SA1 | 20.9 | 21.1 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:1043217-1043959:+ | gene-YLR466W_VR1 | rna-NM_001182354.3_VR1 | cds-NP_013571.3_VR1 | 17.5 | 17.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:353066-357260:+ | gene-YLR466W_Sparadoxus | rna-NM_001182354.3_Sparadoxus | cds-NP_013571.3_Sparadoxus | 95.9 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |