YRF1-3 (YGR296W)

Gene profile

Gene name: YRF1-3
Reference locus (S288C): YGR296W
Gene biotype: protein_coding

Description: Helicase encoded by the Y' element of subtelomeric regions; highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p

Top 10 interactors (score): YGR296C-A (0.92); YER190C-B (0.92); YBL113C (0.874); YHL050C (0.873); YLL067C (0.873); YLL066C (0.873); YRF1-4 (0.873); YRF1-2 (0.873); YEL077C (0.873); YRF1-5 (0.873); YRF1-6 (0.873); YIL177C (0.873); YML133C (0.873); YJL225C (0.873); YBL112C (0.872); YRF1-7 (0.872); YRF1-1 (0.872); YHR219W (0.872); YBL111C (0.794); YHR218W (0.767)

Homologues (species, bitscore): EIF4A1 (Homo sapiens, 51.2); Eif4a1 (Mus musculus, 51.2); mia3 (Danio rerio, 57.0); eif4a1 (Xenopus tropicalis, 51.2); CG15765 (Drosophila melanogaster, 73.6); inf-1 (Caenorhabditis elegans, 52.4)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:1084864-1090591:+ gene-YGR296W_NCIM3186 rna-NM_001181425.3_NCIM3186 cds-NP_011812.3_NCIM3186 100.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:1084864-1090591:+ gene-YGR296W_S288C rna-NM_001181425.3_S288C cds-NP_011812.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047488.1:409-6148:- gene-YGR296W_Sparadoxus rna-NM_001181425.3_Sparadoxus cds-NP_011812.3_Sparadoxus 96.2 99.2 Unannotated 1 1 0 False False False True False

Additional files