Gene name: YRB1
Reference locus (S288C): YDR002W
Gene biotype: protein_coding
Description: Ran-specific GTPase-activating protein 1; Ran GTPase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1
Top 10 interactors (score): SMT3 (0.999); MEX67 (0.999); CRM1 (0.999); GSP1 (0.999); RNA1 (0.999); UBC9 (0.998); GSP2 (0.997); SRM1 (0.995); NSP1 (0.994); KAP95 (0.993); NUP2 (0.984); NTF2 (0.984); SRP1 (0.964); HDA1 (0.955); PFS2 (0.947); NUP192 (0.932); YRB2 (0.928); CBC2 (0.927); CDC33 (0.925); NIC96 (0.924)
Homologues (species, bitscore): RANBP1 (Homo sapiens, 158.7); Ranbp1 (Mus musculus, 157.5); ranbp1 (Danio rerio, 161.8); ranbp1 (Xenopus tropicalis, 151.4); Nup358 (Drosophila melanogaster, 112.1); npp-9 (Caenorhabditis elegans, 99.0); SIRANBP (Arabidopsis thaliana, 127.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:438294-438899:+ | gene-YDR002W_AKU4011 | rna-NM_001180310.1_AKU4011 | cds-NP_010285.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:110250-110855:- | gene-YDR002W_BG1 | rna-NM_001180310.1_BG1 | cds-NP_010285.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:458902-459507:+ | gene-YDR002W_Bruggeman | rna-NM_001180310.1_Bruggeman | cds-NP_010285.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:451747-452352:+ | gene-YDR002W_CAT1 | rna-NM_001180310.1_CAT1 | cds-NP_010285.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:435506-436111:+ | gene-YDR002W_CBS1585 | rna-NM_001180310.1_CBS1585 | cds-NP_010285.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:452277-452882:+ | gene-YDR002W_CBS436 | rna-NM_001180310.1_CBS436 | cds-NP_010285.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:432753-433358:+ | gene-YDR002W_CBS6412 | rna-NM_001180310.1_CBS6412 | cds-NP_010285.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:454444-455049:+ | gene-YDR002W_CBS6413 | rna-NM_001180310.1_CBS6413 | cds-NP_010285.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:451908-452513:+ | gene-YDR002W_CENPK1137D | rna-NM_001180310.1_CENPK1137D | cds-NP_010285.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:447125-447730:+ | gene-YDR002W_EthanolRed | rna-NM_001180310.1_EthanolRed | cds-NP_010285.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:453296-453901:+ | gene-YDR002W_FaliES1 | rna-NM_001180310.1_FaliES1 | cds-NP_010285.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000442.1:18142-18747:- | gene-YDR002W_JAY291 | rna-NM_001180310.1_JAY291 | cds-NP_010285.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:452775-453380:+ | gene-YDR002W_MUCL30387 | rna-NM_001180310.1_MUCL30387 | cds-NP_010285.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:443235-443840:+ | gene-YDR002W_MUCL30388 | rna-NM_001180310.1_MUCL30388 | cds-NP_010285.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:436875-437480:+ | gene-YDR002W_MUCL39482 | rna-NM_001180310.1_MUCL39482 | cds-NP_010285.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:358308-358913:+ | gene-YDR002W_MUCL42920 | rna-NM_001180310.1_MUCL42920 | cds-NP_010285.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:452968-453573:+ | gene-YDR002W_NCIM3186 | rna-NM_001180310.1_NCIM3186 | cds-NP_010285.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:435797-436402:+ | gene-YDR002W_NCYC1407 | rna-NM_001180310.1_NCYC1407 | cds-NP_010285.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:451428-452033:+ | gene-YDR002W_PE2H3 | rna-NM_001180310.1_PE2H3 | cds-NP_010285.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:450719-451324:+ | gene-YDR002W_PE2H4 | rna-NM_001180310.1_PE2H4 | cds-NP_010285.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:453045-453650:+ | gene-YDR002W_S288C | rna-NM_001180310.1_S288C | cds-NP_010285.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000099.1:18319-18924:- | gene-YDR002W_SA1 | rna-NM_001180310.1_SA1 | cds-NP_010285.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:452775-453380:+ | gene-YDR002W_ThermosaccDry | rna-NM_001180310.1_ThermosaccDry | cds-NP_010285.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:457217-457822:+ | gene-YDR002W_VR1 | rna-NM_001180310.1_VR1 | cds-NP_010285.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:450672-451277:+ | gene-YDR002W_ZTW1 | rna-NM_001180310.1_ZTW1 | cds-NP_010285.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:454999-455604:+ | gene-YDR002W_Sparadoxus | rna-NM_001180310.1_Sparadoxus | cds-NP_010285.1_Sparadoxus | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |