Gene name: YRA2
Reference locus (S288C): YKL214C
Gene biotype: protein_coding
Description: RNA annealing protein YRA2; Member of the REF (RNA and export factor binding proteins) family; when overexpressed, can substitute for the function of Yra1p in export of poly(A)+ mRNA from the nucleus
Top 10 interactors (score): YRA1 (0.93); STO1 (0.826); CBC2 (0.81); SUB2 (0.806); MEX67 (0.76); YHC3 (0.7); RTC3 (0.684); THP2 (0.637); NAB2 (0.628); NPL3 (0.617); MRN1 (0.573); MDM20 (0.571); NAT3 (0.561); PSE1 (0.528); URB2 (0.495); SMT3 (0.454); JSN1 (0.454); MSL5 (0.45); NSR1 (0.45); MLP2 (0.404)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:16911-17522:- | gene-YKL214C_AKU4011 | rna-NM_001179779.1_AKU4011 | cds-NP_012708.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000209.1:1926-2537:- | gene-YKL214C_BG1 | rna-NM_001179779.1_BG1 | cds-NP_012708.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:35071-35682:- | gene-YKL214C_Bruggeman | rna-NM_001179779.1_Bruggeman | cds-NP_012708.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:29713-30324:- | gene-YKL214C_CAT1 | rna-NM_001179779.1_CAT1 | cds-NP_012708.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:28929-29540:- | gene-YKL214C_CBS1585 | rna-NM_001179779.1_CBS1585 | cds-NP_012708.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:28615-29226:- | gene-YKL214C_CBS436 | rna-NM_001179779.1_CBS436 | cds-NP_012708.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:15058-15669:- | gene-YKL214C_CBS6412 | rna-NM_001179779.1_CBS6412 | cds-NP_012708.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:29558-30169:- | gene-YKL214C_CBS6413 | rna-NM_001179779.1_CBS6413 | cds-NP_012708.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:30920-31531:- | gene-YKL214C_CENPK1137D | rna-NM_001179779.1_CENPK1137D | cds-NP_012708.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:29043-29654:- | gene-YKL214C_EthanolRed | rna-NM_001179779.1_EthanolRed | cds-NP_012708.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:28913-29524:- | gene-YKL214C_FaliES1 | rna-NM_001179779.1_FaliES1 | cds-NP_012708.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:28547-29158:- | gene-YKL214C_JAY291 | rna-NM_001179779.1_JAY291 | cds-NP_012708.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:37124-37735:- | gene-YKL214C_MUCL30387 | rna-NM_001179779.1_MUCL30387 | cds-NP_012708.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:31451-32062:- | gene-YKL214C_MUCL30388 | rna-NM_001179779.1_MUCL30388 | cds-NP_012708.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:28988-29599:- | gene-YKL214C_MUCL39482 | rna-NM_001179779.1_MUCL39482 | cds-NP_012708.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:32760-33371:- | gene-YKL214C_MUCL42920 | rna-NM_001179779.1_MUCL42920 | cds-NP_012708.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:31071-31682:- | gene-YKL214C_NCIM3186 | rna-NM_001179779.1_NCIM3186 | cds-NP_012708.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:29012-29623:- | gene-YKL214C_NCYC1407 | rna-NM_001179779.1_NCYC1407 | cds-NP_012708.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:37181-37792:- | gene-YKL214C_PE2H3 | rna-NM_001179779.1_PE2H3 | cds-NP_012708.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:33379-33990:- | gene-YKL214C_PE2H4 | rna-NM_001179779.1_PE2H4 | cds-NP_012708.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:31082-31693:- | gene-YKL214C_S288C | rna-NM_001179779.1_S288C | cds-NP_012708.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000092.1:36187-36798:+ | gene-YKL214C_SA1 | rna-NM_001179779.1_SA1 | cds-NP_012708.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:29637-30248:- | gene-YKL214C_ThermosaccDry | rna-NM_001179779.1_ThermosaccDry | cds-NP_012708.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:28796-29407:- | gene-YKL214C_VR1 | rna-NM_001179779.1_VR1 | cds-NP_012708.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:28602-29213:- | gene-YKL214C_ZTW1 | rna-NM_001179779.1_ZTW1 | cds-NP_012708.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:37335-37943:- | gene-YKL214C_Sparadoxus | rna-NM_001179779.1_Sparadoxus | cds-NP_012708.1_Sparadoxus | 91.6 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |