Gene name: YPT7
Reference locus (S288C): YML001W
Gene biotype: protein_coding
Description: Rab family GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion; localizes to sites of contact between the vacuole and mitochondria (vCLAMPs); interacts with the cargo selection/retromer complex for retrograde sorting; similar to mammalian Rab7
Top 10 interactors (score): PEP5 (0.999); VPS35 (0.999); VAM6 (0.999); VPS33 (0.999); VPS41 (0.999); MON1 (0.999); PEP3 (0.999); GDI1 (0.999); VPS16 (0.999); CCZ1 (0.998); VPS3 (0.997); GYP7 (0.996); VAM7 (0.987); VPS29 (0.987); PEP8 (0.987); YPT1 (0.987); SEC1 (0.983); MRS6 (0.982); VAM3 (0.981); ATG8 (0.979)
Homologues (species, bitscore): RAB7A (Homo sapiens, 255.8); Rab7 (Mus musculus, 255.8); zgc:100918 (Danio rerio, 263.8); rab7a (Xenopus tropicalis, 256.1); Rab7 (Drosophila melanogaster, 247.3); rab-7 (Caenorhabditis elegans, 249.2); RABG3c (Arabidopsis thaliana, 248.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:316803-317429:+ | gene-YML001W_AKU4011 | rna-NM_001182356.1_AKU4011 | cds-NP_013713.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:225451-226077:- | gene-YML001W_BG1 | rna-NM_001182356.1_BG1 | cds-NP_013713.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:256728-257354:+ | gene-YML001W_Bruggeman | rna-NM_001182356.1_Bruggeman | cds-NP_013713.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:259229-259855:+ | gene-YML001W_CAT1 | rna-NM_001182356.1_CAT1 | cds-NP_013713.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:249744-250370:+ | gene-YML001W_CBS1585 | rna-NM_001182356.1_CBS1585 | cds-NP_013713.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:255265-255891:+ | gene-YML001W_CBS436 | rna-NM_001182356.1_CBS436 | cds-NP_013713.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:363148-363774:+ | gene-YML001W_CBS6412 | rna-NM_001182356.1_CBS6412 | cds-NP_013713.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:249000-249626:+ | gene-YML001W_CBS6413 | rna-NM_001182356.1_CBS6413 | cds-NP_013713.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:261905-262531:+ | gene-YML001W_CENPK1137D | rna-NM_001182356.1_CENPK1137D | cds-NP_013713.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:249551-250177:+ | gene-YML001W_EthanolRed | rna-NM_001182356.1_EthanolRed | cds-NP_013713.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:252737-253363:+ | gene-YML001W_FaliES1 | rna-NM_001182356.1_FaliES1 | cds-NP_013713.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:183584-184210:- | gene-YML001W_JAY291 | rna-NM_001182356.1_JAY291 | cds-NP_013713.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:254456-255082:+ | gene-YML001W_MUCL30387 | rna-NM_001182356.1_MUCL30387 | cds-NP_013713.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:259118-259744:+ | gene-YML001W_MUCL30388 | rna-NM_001182356.1_MUCL30388 | cds-NP_013713.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:250029-250655:+ | gene-YML001W_MUCL39482 | rna-NM_001182356.1_MUCL39482 | cds-NP_013713.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:255572-256198:+ | gene-YML001W_MUCL42920 | rna-NM_001182356.1_MUCL42920 | cds-NP_013713.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:267128-267754:+ | gene-YML001W_NCIM3186 | rna-NM_001182356.1_NCIM3186 | cds-NP_013713.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:249946-250572:+ | gene-YML001W_NCYC1407 | rna-NM_001182356.1_NCYC1407 | cds-NP_013713.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:255863-256489:+ | gene-YML001W_PE2H3 | rna-NM_001182356.1_PE2H3 | cds-NP_013713.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:261958-262584:+ | gene-YML001W_PE2H4 | rna-NM_001182356.1_PE2H4 | cds-NP_013713.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:267174-267800:+ | gene-YML001W_S288C | rna-NM_001182356.1_S288C | cds-NP_013713.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:270471-271097:- | gene-YML001W_SA1 | rna-NM_001182356.1_SA1 | cds-NP_013713.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:249802-250428:+ | gene-YML001W_ThermosaccDry | rna-NM_001182356.1_ThermosaccDry | cds-NP_013713.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:253750-254376:+ | gene-YML001W_VR1 | rna-NM_001182356.1_VR1 | cds-NP_013713.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:228845-229471:+ | gene-YML001W_ZTW1 | rna-NM_001182356.1_ZTW1 | cds-NP_013713.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:261238-261864:+ | gene-YML001W_Sparadoxus | rna-NM_001182356.1_Sparadoxus | cds-NP_013713.1_Sparadoxus | 95.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |