Gene name: YPT31
Reference locus (S288C): YER031C
Gene biotype: protein_coding
Description: GTP-binding protein YPT31/YPT8; Rab family GTPase; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi; YPT31 has a paralog, YPT32, that arose from the whole genome duplication; localizes to the transitional and late Golgi
Top 10 interactors (score): GDI1 (0.999); MYO2 (0.997); YPT1 (0.99); PIK1 (0.99); TRS130 (0.989); SEC7 (0.985); SEC4 (0.984); SEC2 (0.981); TRS120 (0.981); SEC15 (0.958); YPT32 (0.956); YIP1 (0.95); RCY1 (0.95); MYO4 (0.941); GYP1 (0.932); MRS6 (0.925); SNC1 (0.924); BET3 (0.923); EXO70 (0.919); TRS33 (0.919)
Homologues (species, bitscore): RAB11B (Homo sapiens, 275.4); Rab11b (Mus musculus, 275.0); Rab11bb (Danio rerio, 276.2); rab11b.2 (Xenopus tropicalis, 275.8); Rab11 (Drosophila melanogaster, 266.5); rab-11.1 (Caenorhabditis elegans, 266.2); RABA1b (Arabidopsis thaliana, 268.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:208103-208774:- | gene-YER031C_AKU4011 | rna-NM_001178922.1_AKU4011 | cds-NP_010948.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:216949-217620:+ | gene-YER031C_BG1 | rna-NM_001178922.1_BG1 | cds-NP_010948.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:217004-217675:- | gene-YER031C_Bruggeman | rna-NM_001178922.1_Bruggeman | cds-NP_010948.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:211123-211794:- | gene-YER031C_CAT1 | rna-NM_001178922.1_CAT1 | cds-NP_010948.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:208026-208697:- | gene-YER031C_CBS1585 | rna-NM_001178922.1_CBS1585 | cds-NP_010948.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:209977-210648:- | gene-YER031C_CBS436 | rna-NM_001178922.1_CBS436 | cds-NP_010948.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:208270-208941:- | gene-YER031C_CBS6412 | rna-NM_001178922.1_CBS6412 | cds-NP_010948.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:213518-214189:- | gene-YER031C_CBS6413 | rna-NM_001178922.1_CBS6413 | cds-NP_010948.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:212015-212686:- | gene-YER031C_CENPK1137D | rna-NM_001178922.1_CENPK1137D | cds-NP_010948.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:208735-209406:- | gene-YER031C_EthanolRed | rna-NM_001178922.1_EthanolRed | cds-NP_010948.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:209000-209671:- | gene-YER031C_FaliES1 | rna-NM_001178922.1_FaliES1 | cds-NP_010948.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:6777-7448:- | gene-YER031C_JAY291 | rna-NM_001178922.1_JAY291 | cds-NP_010948.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:212436-213107:- | gene-YER031C_MUCL30387 | rna-NM_001178922.1_MUCL30387 | cds-NP_010948.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:208668-209339:- | gene-YER031C_MUCL30388 | rna-NM_001178922.1_MUCL30388 | cds-NP_010948.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:207070-207741:- | gene-YER031C_MUCL39482 | rna-NM_001178922.1_MUCL39482 | cds-NP_010948.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:214165-214836:- | gene-YER031C_MUCL42920 | rna-NM_001178922.1_MUCL42920 | cds-NP_010948.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:214075-214746:- | gene-YER031C_NCIM3186 | rna-NM_001178922.1_NCIM3186 | cds-NP_010948.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:212141-212812:- | gene-YER031C_NCYC1407 | rna-NM_001178922.1_NCYC1407 | cds-NP_010948.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:222785-223456:- | gene-YER031C_PE2H3 | rna-NM_001178922.1_PE2H3 | cds-NP_010948.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:212725-213396:- | gene-YER031C_PE2H4 | rna-NM_001178922.1_PE2H4 | cds-NP_010948.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:214076-214747:- | gene-YER031C_S288C | rna-NM_001178922.1_S288C | cds-NP_010948.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:28937-29608:+ | gene-YER031C_SA1 | rna-NM_001178922.1_SA1 | cds-NP_010948.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:209771-210442:- | gene-YER031C_ThermosaccDry | rna-NM_001178922.1_ThermosaccDry | cds-NP_010948.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:208881-209552:- | gene-YER031C_VR1 | rna-NM_001178922.1_VR1 | cds-NP_010948.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:206983-207654:- | gene-YER031C_ZTW1 | rna-NM_001178922.1_ZTW1 | cds-NP_010948.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:210897-211568:- | gene-YER031C_Sparadoxus | rna-NM_001178922.1_Sparadoxus | cds-NP_010948.1_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |