Gene name: YPT11
Reference locus (S288C): YNL304W
Gene biotype: protein_coding
Description: GTP-binding protein YPT11; Rab GTPase; Myo2p-binding protein implicated in mother-to-bud transport of cortical endoplasmic reticulum (ER), late Golgi, and mitochondria during cell division; function is regulated at multiple levels; abundance of active Ypt11p forms is controlled by phosphorylation status and degradation; normally a low-abundance protein whose ER localization is only detected when protein is highly over expressed
Top 10 interactors (score): MYO2 (0.998); MMR1 (0.968); RET2 (0.951); VAM6 (0.935); PEP5 (0.928); MYO4 (0.921); SEC2 (0.897); SEC22 (0.891); SEC4 (0.881); YKT6 (0.868); YPT1 (0.861); GDI1 (0.857); TRS120 (0.854); ARF1 (0.838); BOS1 (0.829); SEC15 (0.821); ARF2 (0.81); GEA2 (0.808); ARF3 (0.802); BIM1 (0.799)
Homologues (species, bitscore): RAB44 (Homo sapiens, 82.0); Rab33b (Mus musculus, 80.9); rab33ba (Danio rerio, 84.0); rab33b (Xenopus tropicalis, 85.1); Rab8 (Drosophila melanogaster, 75.5); rab-7 (Caenorhabditis elegans, 80.5); RABA1e (Arabidopsis thaliana, 79.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:54097-55350:+ | gene-YNL304W_AKU4011 | rna-NM_001183142.1_AKU4011 | cds-NP_014095.2_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:35294-36547:- | gene-YNL304W_BG1 | rna-NM_001183142.1_BG1 | cds-NP_014095.2_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:63433-64686:+ | gene-YNL304W_Bruggeman | rna-NM_001183142.1_Bruggeman | cds-NP_014095.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:66049-67302:+ | gene-YNL304W_CAT1 | rna-NM_001183142.1_CAT1 | cds-NP_014095.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:54429-55682:+ | gene-YNL304W_CBS1585 | rna-NM_001183142.1_CBS1585 | cds-NP_014095.2_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:54918-56171:+ | gene-YNL304W_CBS436 | rna-NM_001183142.1_CBS436 | cds-NP_014095.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:51088-52341:+ | gene-YNL304W_CBS6412 | rna-NM_001183142.1_CBS6412 | cds-NP_014095.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:51277-52530:+ | gene-YNL304W_CBS6413 | rna-NM_001183142.1_CBS6413 | cds-NP_014095.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:54124-55377:+ | gene-YNL304W_CENPK1137D | rna-NM_001183142.1_CENPK1137D | cds-NP_014095.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:51119-52372:+ | gene-YNL304W_EthanolRed | rna-NM_001183142.1_EthanolRed | cds-NP_014095.2_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:52018-53271:+ | gene-YNL304W_FaliES1 | rna-NM_001183142.1_FaliES1 | cds-NP_014095.2_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:2250-3503:- | gene-YNL304W_JAY291 | rna-NM_001183142.1_JAY291 | cds-NP_014095.2_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:63691-64944:+ | gene-YNL304W_MUCL30387 | rna-NM_001183142.1_MUCL30387 | cds-NP_014095.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:56722-57975:+ | gene-YNL304W_MUCL30388 | rna-NM_001183142.1_MUCL30388 | cds-NP_014095.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:52065-53318:+ | gene-YNL304W_MUCL39482 | rna-NM_001183142.1_MUCL39482 | cds-NP_014095.2_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:53754-55007:+ | gene-YNL304W_MUCL42920 | rna-NM_001183142.1_MUCL42920 | cds-NP_014095.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:60266-61519:+ | gene-YNL304W_NCIM3186 | rna-NM_001183142.1_NCIM3186 | cds-NP_014095.2_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:53397-54650:+ | gene-YNL304W_NCYC1407 | rna-NM_001183142.1_NCYC1407 | cds-NP_014095.2_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:50596-51849:+ | gene-YNL304W_PE2H3 | rna-NM_001183142.1_PE2H3 | cds-NP_014095.2_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:49984-51237:+ | gene-YNL304W_PE2H4 | rna-NM_001183142.1_PE2H4 | cds-NP_014095.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:60297-61550:+ | gene-YNL304W_S288C | rna-NM_001183142.1_S288C | cds-NP_014095.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:35679-36932:- | gene-YNL304W_SA1 | rna-NM_001183142.1_SA1 | cds-NP_014095.2_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:52875-54128:+ | gene-YNL304W_ThermosaccDry | rna-NM_001183142.1_ThermosaccDry | cds-NP_014095.2_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:65414-66667:+ | gene-YNL304W_VR1 | rna-NM_001183142.1_VR1 | cds-NP_014095.2_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:44091-45344:+ | gene-YNL304W_ZTW1 | rna-NM_001183142.1_ZTW1 | cds-NP_014095.2_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:62123-63376:+ | gene-YNL304W_Sparadoxus | rna-NM_001183142.1_Sparadoxus | cds-NP_014095.2_Sparadoxus | 89.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |