Gene name: YPT10
Reference locus (S288C): YBR264C
Gene biotype: protein_coding
Description: Rab family GTP-binding protein; contains the PEST signal sequence specific for proteolytic enzymes; may be involved in vesicular transport; overexpression leads to accumulation of Golgi-like cisternae with budding vesicles
Top 10 interactors (score): VPS9 (0.991); GDI1 (0.989); MRS6 (0.969); MUK1 (0.9); PEP7 (0.888); VPS45 (0.861); YIP4 (0.794); YPT7 (0.785); YIP3 (0.774); RSR1 (0.754); YPT6 (0.73); YIF1 (0.726); BET2 (0.718); YPT11 (0.709); SNC1 (0.701); VPS21 (0.701); VPS4 (0.699); SHM1 (0.699); YPT1 (0.699); YPT32 (0.691)
Homologues (species, bitscore): RAB5C (Homo sapiens, 123.6); Rab5b (Mus musculus, 122.1); zgc:112018 (Danio rerio, 123.6); rab5c (Xenopus tropicalis, 120.9); Rab5 (Drosophila melanogaster, 124.8); rab-5 (Caenorhabditis elegans, 120.2); RABH1e (Arabidopsis thaliana, 125.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:722052-722651:- | gene-YBR264C_AKU4011 | rna-NM_001178612.1_AKU4011 | cds-NP_009823.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:93077-93676:- | gene-YBR264C_BG1 | rna-NM_001178612.1_BG1 | cds-NP_009823.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:723216-723815:- | gene-YBR264C_Bruggeman | rna-NM_001178612.1_Bruggeman | cds-NP_009823.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:726943-727542:- | gene-YBR264C_CAT1 | rna-NM_001178612.1_CAT1 | cds-NP_009823.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:713618-714217:- | gene-YBR264C_CBS1585 | rna-NM_001178612.1_CBS1585 | cds-NP_009823.2_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:720064-720663:- | gene-YBR264C_CBS436 | rna-NM_001178612.1_CBS436 | cds-NP_009823.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:808233-808832:- | gene-YBR264C_CBS6412 | rna-NM_001178612.1_CBS6412 | cds-NP_009823.2_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:719666-720265:- | gene-YBR264C_CBS6413 | rna-NM_001178612.1_CBS6413 | cds-NP_009823.2_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:731678-732277:- | gene-YBR264C_CENPK1137D | rna-NM_001178612.1_CENPK1137D | cds-NP_009823.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:845087-845686:- | gene-YBR264C_EthanolRed | rna-NM_001178612.1_EthanolRed | cds-NP_009823.2_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:738434-739033:- | gene-YBR264C_FaliES1 | rna-NM_001178612.1_FaliES1 | cds-NP_009823.2_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:65022-65621:+ | gene-YBR264C_JAY291 | rna-NM_001178612.1_JAY291 | cds-NP_009823.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:725259-725858:- | gene-YBR264C_MUCL30387 | rna-NM_001178612.1_MUCL30387 | cds-NP_009823.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:742342-742941:- | gene-YBR264C_MUCL30388 | rna-NM_001178612.1_MUCL30388 | cds-NP_009823.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:711925-712524:- | gene-YBR264C_MUCL39482 | rna-NM_001178612.1_MUCL39482 | cds-NP_009823.2_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:721798-722397:- | gene-YBR264C_MUCL42920 | rna-NM_001178612.1_MUCL42920 | cds-NP_009823.2_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:737567-738166:- | gene-YBR264C_NCIM3186 | rna-NM_001178612.1_NCIM3186 | cds-NP_009823.2_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:713814-714413:- | gene-YBR264C_NCYC1407 | rna-NM_001178612.1_NCYC1407 | cds-NP_009823.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:736945-737544:- | gene-YBR264C_PE2H3 | rna-NM_001178612.1_PE2H3 | cds-NP_009823.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:734621-735220:- | gene-YBR264C_PE2H4 | rna-NM_001178612.1_PE2H4 | cds-NP_009823.2_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:737770-738369:- | gene-YBR264C_S288C | rna-NM_001178612.1_S288C | cds-NP_009823.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:92896-93495:- | gene-YBR264C_SA1 | rna-NM_001178612.1_SA1 | cds-NP_009823.2_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:737426-738025:- | gene-YBR264C_ThermosaccDry | rna-NM_001178612.1_ThermosaccDry | cds-NP_009823.2_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:717643-718242:- | gene-YBR264C_VR1 | rna-NM_001178612.1_VR1 | cds-NP_009823.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:710272-710871:- | gene-YBR264C_ZTW1 | rna-NM_001178612.1_ZTW1 | cds-NP_009823.2_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:754178-754777:- | gene-YBR264C_Sparadoxus | rna-NM_001178612.1_Sparadoxus | cds-NP_009823.2_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |