Gene name: YPS6
Reference locus (S288C): YIR039C
Gene biotype: protein_coding
Description: Aspartic proteinase yapsin-6; Putative GPI-anchored aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance
Top 10 interactors (score): DDI1 (0.718); YIR042C (0.713); PRB1 (0.665); IRC22 (0.65); MSB2 (0.571); YIL082W-A (0.565); STE24 (0.56); YPS5 (0.554); KEX2 (0.534); YPS7 (0.527); PRC1 (0.506); KEX1 (0.505); YGR109W-B (0.499); RRT12 (0.491); UFO1 (0.486); YIL001W (0.481); YHR140W (0.475); ISW1 (0.467); RCE1 (0.452); YGL114W (0.45)
Homologues (species, bitscore): PGC (Homo sapiens, 85.1); Pgc (Mus musculus, 81.3); ctsd (Danio rerio, 61.2); pga4 (Xenopus tropicalis, 68.9); CG6508 (Drosophila melanogaster, 75.9); asp-1 (Caenorhabditis elegans, 68.6); AT3G02740 (Arabidopsis thaliana, 63.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:429532-431145:- | gene-YIR039C_AKU4011 | rna-NM_001179561.3_AKU4011 | cds-NP_012305.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000127.1:1589-3202:- | gene-YIR039C_BG1 | rna-NM_001179561.3_BG1 | cds-NP_012305.3_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:435224-436837:- | gene-YIR039C_Bruggeman | rna-NM_001179561.3_Bruggeman | cds-NP_012305.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:419896-421509:- | gene-YIR039C_CAT1 | rna-NM_001179561.3_CAT1 | cds-NP_012305.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:429937-431550:- | gene-YIR039C_CBS1585 | rna-NM_001179561.3_CBS1585 | cds-NP_012305.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:421718-423220:- | gene-YIR039C_CBS436 | rna-NM_001179561.3_CBS436 | cds-NP_012305.3_CBS436 | 92.2 | 93.1 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:128164-129777:- | gene-YIR039C_CBS6412 | rna-NM_001179561.3_CBS6412 | cds-NP_012305.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:420761-422374:- | gene-YIR039C_CBS6413 | rna-NM_001179561.3_CBS6413 | cds-NP_012305.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:422156-423779:- | gene-YIR039C_CENPK1137D | rna-NM_001179561.3_CENPK1137D | cds-NP_012305.3_CENPK1137D | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:411683-413296:- | gene-YIR039C_EthanolRed | rna-NM_001179561.3_EthanolRed | cds-NP_012305.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:431511-433124:- | gene-YIR039C_FaliES1 | rna-NM_001179561.3_FaliES1 | cds-NP_012305.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000039.1:1001-2614:+ | gene-YIR039C_JAY291 | rna-NM_001179561.3_JAY291 | cds-NP_012305.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:436424-438037:- | gene-YIR039C_MUCL30387 | rna-NM_001179561.3_MUCL30387 | cds-NP_012305.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:430797-432410:- | gene-YIR039C_MUCL30388 | rna-NM_001179561.3_MUCL30388 | cds-NP_012305.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:429809-431422:- | gene-YIR039C_MUCL39482 | rna-NM_001179561.3_MUCL39482 | cds-NP_012305.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:436152-437765:- | gene-YIR039C_MUCL42920 | rna-NM_001179561.3_MUCL42920 | cds-NP_012305.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:430498-432111:- | gene-YIR039C_NCIM3186 | rna-NM_001179561.3_NCIM3186 | cds-NP_012305.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:433595-435208:- | gene-YIR039C_NCYC1407 | rna-NM_001179561.3_NCYC1407 | cds-NP_012305.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:424522-426135:- | gene-YIR039C_PE2H3 | rna-NM_001179561.3_PE2H3 | cds-NP_012305.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:419228-420841:- | gene-YIR039C_PE2H4 | rna-NM_001179561.3_PE2H4 | cds-NP_012305.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:430498-432111:- | gene-YIR039C_S288C | rna-NM_001179561.3_S288C | cds-NP_012305.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000134.1:2057-3670:- | gene-YIR039C_SA1 | rna-NM_001179561.3_SA1 | cds-NP_012305.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:428376-429989:- | gene-YIR039C_ThermosaccDry | rna-NM_001179561.3_ThermosaccDry | cds-NP_012305.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:425765-427378:- | gene-YIR039C_VR1 | rna-NM_001179561.3_VR1 | cds-NP_012305.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000020.1:37603-39216:- | gene-YIR039C_ZTW1 | rna-NM_001179561.3_ZTW1 | cds-NP_012305.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:9333-10956:+ | gene-YIR039C_Sparadoxus | rna-NM_001179561.3_Sparadoxus | cds-NP_012305.3_Sparadoxus | 81.1 | 99.8 | Verified | 1 | 1 | 0 | False | False | True | False | False |