Gene name: YPR172W
Reference locus (S288C): YPR172W
Gene biotype: protein_coding
Description: Pyridoxamine 5'-phosphate oxidase homolog; Protein of unknown function; predicted to encode a pyridoxal 5'-phosphate synthase based on sequence similarity but purified protein does not possess this activity, nor does it bind flavin mononucleotide (FMN); transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; YPR172W has a paralog, YLR456W, that arose from the whole genome duplication
Top 10 interactors (score): BUD16 (0.9); THI5 (0.9); THI11 (0.9); THI13 (0.9); THI12 (0.9); VPS4 (0.428)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:840077-840679:+ | gene-YPR172W_AKU4011 | rna-NM_001184269.1_AKU4011 | cds-NP_015498.1_AKU4011 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:57033-57635:- | gene-YPR172W_BG1 | rna-NM_001184269.1_BG1 | cds-NP_015498.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:921360-921962:+ | gene-YPR172W_Bruggeman | rna-NM_001184269.1_Bruggeman | cds-NP_015498.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:963421-964023:+ | gene-YPR172W_CAT1 | rna-NM_001184269.1_CAT1 | cds-NP_015498.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:844879-845481:+ | gene-YPR172W_CBS1585 | rna-NM_001184269.1_CBS1585 | cds-NP_015498.1_CBS1585 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:858424-859026:+ | gene-YPR172W_CBS436 | rna-NM_001184269.1_CBS436 | cds-NP_015498.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:846663-847265:+ | gene-YPR172W_CBS6412 | rna-NM_001184269.1_CBS6412 | cds-NP_015498.1_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:841807-842409:+ | gene-YPR172W_CBS6413 | rna-NM_001184269.1_CBS6413 | cds-NP_015498.1_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:885883-886485:+ | gene-YPR172W_CENPK1137D | rna-NM_001184269.1_CENPK1137D | cds-NP_015498.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1161839-1162441:+ | gene-YPR172W_EthanolRed | rna-NM_001184269.1_EthanolRed | cds-NP_015498.1_EthanolRed | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:841912-842514:+ | gene-YPR172W_FaliES1 | rna-NM_001184269.1_FaliES1 | cds-NP_015498.1_FaliES1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:29207-29809:+ | gene-YPR172W_JAY291 | rna-NM_001184269.1_JAY291 | cds-NP_015498.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:888606-889208:+ | gene-YPR172W_MUCL30387 | rna-NM_001184269.1_MUCL30387 | cds-NP_015498.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:862736-863338:+ | gene-YPR172W_MUCL30388 | rna-NM_001184269.1_MUCL30388 | cds-NP_015498.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:837079-837681:+ | gene-YPR172W_MUCL39482 | rna-NM_001184269.1_MUCL39482 | cds-NP_015498.1_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:901545-902147:+ | gene-YPR172W_MUCL42920 | rna-NM_001184269.1_MUCL42920 | cds-NP_015498.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:885779-886381:+ | gene-YPR172W_NCIM3186 | rna-NM_001184269.1_NCIM3186 | cds-NP_015498.1_NCIM3186 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:845440-846042:+ | gene-YPR172W_NCYC1407 | rna-NM_001184269.1_NCYC1407 | cds-NP_015498.1_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:857731-858333:+ | gene-YPR172W_PE2H3 | rna-NM_001184269.1_PE2H3 | cds-NP_015498.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:857379-857981:+ | gene-YPR172W_PE2H4 | rna-NM_001184269.1_PE2H4 | cds-NP_015498.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:885796-886398:+ | gene-YPR172W_S288C | rna-NM_001184269.1_S288C | cds-NP_015498.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:39413-40015:- | gene-YPR172W_SA1 | rna-NM_001184269.1_SA1 | cds-NP_015498.1_SA1 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:841600-842202:+ | gene-YPR172W_ThermosaccDry | rna-NM_001184269.1_ThermosaccDry | cds-NP_015498.1_ThermosaccDry | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:869386-869988:+ | gene-YPR172W_VR1 | rna-NM_001184269.1_VR1 | cds-NP_015498.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:844152-844754:+ | gene-YPR172W_ZTW1 | rna-NM_001184269.1_ZTW1 | cds-NP_015498.1_ZTW1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:846225-846827:+ | gene-YPR172W_Sparadoxus | rna-NM_001184269.1_Sparadoxus | cds-NP_015498.1_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |