YPR158W-B (YPR158W-B)

Gene profile

Gene name: YPR158W-B
Reference locus (S288C): YPR158W-B
Gene biotype: protein_coding

Description: Transposon Ty1-PR2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): SFB2 (0.717); EAP1 (0.619); RNA14 (0.575); YPL247C (0.451)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:536057-541325:+ gene-YPR158W-B_NCIM3186 rna-NM_001184398.2_NCIM3186 cds-NP_058193.1_NCIM3186 79.4 99.9 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:425966-429445:+ gene-YPR158W-B_PE2H3 rna-NM_001184398.2_PE2H3 cds-NP_058193.1_PE2H3 65.5 66.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:425325-428804:+ gene-YPR158W-B_PE2H4 rna-NM_001184398.2_PE2H4 cds-NP_058193.1_PE2H4 65.5 66.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:844709-849980:+ gene-YPR158W-B_S288C rna-NM_001184398.2_S288C cds-NP_058193.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000039.1:97250-97577:+ gene-YPR158W-B_SA1 rna-NM_001184398.2_SA1 cds-NP_058193.1_SA1 6.2 6.2 Mismatch 1 1 0 False False False True False

Additional files