Gene name: YPR158W-B
Reference locus (S288C): YPR158W-B
Gene biotype: protein_coding
Description: Transposon Ty1-PR2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): SFB2 (0.717); EAP1 (0.619); RNA14 (0.575); YPL247C (0.451)
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:536057-541325:+ | gene-YPR158W-B_NCIM3186 | rna-NM_001184398.2_NCIM3186 | cds-NP_058193.1_NCIM3186 | 79.4 | 99.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:425966-429445:+ | gene-YPR158W-B_PE2H3 | rna-NM_001184398.2_PE2H3 | cds-NP_058193.1_PE2H3 | 65.5 | 66.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:425325-428804:+ | gene-YPR158W-B_PE2H4 | rna-NM_001184398.2_PE2H4 | cds-NP_058193.1_PE2H4 | 65.5 | 66.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:844709-849980:+ | gene-YPR158W-B_S288C | rna-NM_001184398.2_S288C | cds-NP_058193.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:97250-97577:+ | gene-YPR158W-B_SA1 | rna-NM_001184398.2_SA1 | cds-NP_058193.1_SA1 | 6.2 | 6.2 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |