YPR158W-A (YPR158W-A)

Gene profile

Gene name: YPR158W-A
Reference locus (S288C): YPR158W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000349.1:408-482:+ gene-YPR158W-A_CAT1 rna-NM_001184397.1_CAT1 cds-NP_058194.1_CAT1 5.6 5.6 Mismatch 1 1 0 False False False True False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000188.1:1-1240:+ gene-YPR158W-A_JAY291 rna-NM_001184397.1_JAY291 cds-NP_058194.1_JAY291 85.1 93.7 Mismatch 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:844709-846031:+ gene-YPR158W-A_S288C rna-NM_001184397.1_S288C cds-NP_058194.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000039.1:97250-97577:+ gene-YPR158W-A_SA1 rna-NM_001184397.1_SA1 cds-NP_058194.1_SA1 24.7 24.7 Mismatch 1 1 0 False False False True False

Additional files