YPR158C-D (YPR158C-D)

Gene profile

Gene name: YPR158C-D
Reference locus (S288C): YPR158C-D
Gene biotype: protein_coding

Description: Transposon Ty1-PR3 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): SIN3 (0.483)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 94.0)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000115.1:1-495:+ gene-YPR158C-D_CAT1 rna-NM_001184396.2_CAT1 cds-NP_058195.1_CAT1 9.3 9.3 Mismatch 1 1 0 False False True False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000089.1:1-771:+ gene-YPR158C-D_MUCL30387 rna-NM_001184396.2_MUCL30387 cds-NP_058195.1_MUCL30387 14.6 14.6 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994155.1:822988-828256:- gene-YPR158C-D_PE2H3 rna-NM_001184396.2_PE2H3 cds-NP_058195.1_PE2H3 98.5 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999887.1:822636-827904:- gene-YPR158C-D_PE2H4 rna-NM_001184396.2_PE2H4 cds-NP_058195.1_PE2H4 98.5 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:850989-856257:- gene-YPR158C-D_S288C rna-NM_001184396.2_S288C cds-NP_058195.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files