Gene name: YPR158C-D
Reference locus (S288C): YPR158C-D
Gene biotype: protein_coding
Description: Transposon Ty1-PR3 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): SIN3 (0.483)
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 94.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000115.1:1-495:+ | gene-YPR158C-D_CAT1 | rna-NM_001184396.2_CAT1 | cds-NP_058195.1_CAT1 | 9.3 | 9.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000089.1:1-771:+ | gene-YPR158C-D_MUCL30387 | rna-NM_001184396.2_MUCL30387 | cds-NP_058195.1_MUCL30387 | 14.6 | 14.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:822988-828256:- | gene-YPR158C-D_PE2H3 | rna-NM_001184396.2_PE2H3 | cds-NP_058195.1_PE2H3 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:822636-827904:- | gene-YPR158C-D_PE2H4 | rna-NM_001184396.2_PE2H4 | cds-NP_058195.1_PE2H4 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:850989-856257:- | gene-YPR158C-D_S288C | rna-NM_001184396.2_S288C | cds-NP_058195.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |