YPR137C-B (YPR137C-B)

Gene profile

Gene name: YPR137C-B
Reference locus (S288C): YPR137C-B
Gene biotype: protein_coding

Description: Transposon Ty1-PR1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 92.4)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000223.1:1-765:+ gene-YPR137C-B_Bruggeman rna-NM_001184394.2_Bruggeman cds-NP_058191.1_Bruggeman 14.5 14.5 Mismatch 1 1 0 False False True False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000403.1:1-599:- gene-YPR137C-B_CAT1 rna-NM_001184394.2_CAT1 cds-NP_058191.1_CAT1 11.2 11.3 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011825.1:804984-810252:- gene-YPR137C-B_NCIM3186 rna-NM_001184394.2_NCIM3186 cds-NP_058191.1_NCIM3186 90.7 100.0 Verified 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:805001-810269:- gene-YPR137C-B_S288C rna-NM_001184394.2_S288C cds-NP_058191.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000093.1:247-722:+ gene-YPR137C-B_VR1 rna-NM_001184394.2_VR1 cds-NP_058191.1_VR1 9.0 9.0 Mismatch 1 1 0 False False False True False

Additional files