Gene name: YPR137C-A
Reference locus (S288C): YPR137C-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): YAR009C (0.711); ATP20 (0.591); UBX6 (0.567); PUP2 (0.499); SCL1 (0.487); ATP7 (0.454); DIT1 (0.452); FAT1 (0.451); PRE4 (0.45); PRE6 (0.45); VMA10 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:808930-810252:- | gene-YPR137C-A_NCIM3186 | rna-NM_001184393.1_NCIM3186 | cds-NP_058192.1_NCIM3186 | 74.3 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | MBVM01000058.1:1-376:+ | gene-YPR137C-A_NCYC1407 | rna-NM_001184393.1_NCYC1407 | cds-NP_058192.1_NCYC1407 | 25.1 | 28.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:61471-62793:- | gene-YPR137C-A_PE2H4 | rna-NM_001184393.1_PE2H4 | cds-NP_058192.1_PE2H4 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:808947-810269:- | gene-YPR137C-A_S288C | rna-NM_001184393.1_S288C | cds-NP_058192.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000093.1:247-722:+ | gene-YPR137C-A_VR1 | rna-NM_001184393.1_VR1 | cds-NP_058192.1_VR1 | 35.9 | 35.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |