YPR137C-A (YPR137C-A)

Gene profile

Gene name: YPR137C-A
Reference locus (S288C): YPR137C-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): YAR009C (0.711); ATP20 (0.591); UBX6 (0.567); PUP2 (0.499); SCL1 (0.487); ATP7 (0.454); DIT1 (0.452); FAT1 (0.451); PRE4 (0.45); PRE6 (0.45); VMA10 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011825.1:808930-810252:- gene-YPR137C-A_NCIM3186 rna-NM_001184393.1_NCIM3186 cds-NP_058192.1_NCIM3186 74.3 100.0 Mismatch 1 1 0 False False True False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000058.1:1-376:+ gene-YPR137C-A_NCYC1407 rna-NM_001184393.1_NCYC1407 cds-NP_058192.1_NCYC1407 25.1 28.4 Mismatch 1 1 0 False False True False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999881.1:61471-62793:- gene-YPR137C-A_PE2H4 rna-NM_001184393.1_PE2H4 cds-NP_058192.1_PE2H4 99.6 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:808947-810269:- gene-YPR137C-A_S288C rna-NM_001184393.1_S288C cds-NP_058192.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000093.1:247-722:+ gene-YPR137C-A_VR1 rna-NM_001184393.1_VR1 cds-NP_058192.1_VR1 35.9 35.9 Mismatch 1 1 0 False False False True False

Additional files