YPL257W-B (YPL257W-B)

Gene profile

Gene name: YPL257W-B
Reference locus (S288C): YPL257W-B
Gene biotype: protein_coding

Description: Transposon Ty1-PL Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 91.3)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000332.1:1-536:- gene-YPL257W-B_CAT1 rna-NM_001184392.2_CAT1 cds-NP_058189.1_CAT1 10.1 10.1 Mismatch 1 1 0 False False True False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000150.1:1-1071:- gene-YPL257W-B_JAY291 rna-NM_001184392.2_JAY291 cds-NP_058189.1_JAY291 20.2 20.3 Mismatch 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:56748-62016:+ gene-YPL257W-B_S288C rna-NM_001184392.2_S288C cds-NP_058189.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000219.1:1-1064:+ gene-YPL257W-B_SA1 rna-NM_001184392.2_SA1 cds-NP_058189.1_SA1 20.1 20.1 Mismatch 1 1 0 False False True False False

Additional files