YPL257W-A (YPL257W-A)

Gene profile

Gene name: YPL257W-A
Reference locus (S288C): YPL257W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): DMA1 (0.749); CLC1 (0.747); YPL257W (0.746); VHS2 (0.617); BDF2 (0.487); PXL1 (0.483); GLO3 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000150.1:123-1071:- gene-YPL257W-A_JAY291 rna-NM_001184391.1_JAY291 cds-NP_058190.1_JAY291 71.6 71.7 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:1028453-1029775:- gene-YPL257W-A_PE2H3 rna-NM_001184391.1_PE2H3 cds-NP_058190.1_PE2H3 99.6 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:1028197-1029519:- gene-YPL257W-A_PE2H4 rna-NM_001184391.1_PE2H4 cds-NP_058190.1_PE2H4 99.6 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:56748-58070:+ gene-YPL257W-A_S288C rna-NM_001184391.1_S288C cds-NP_058190.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000219.1:1-1064:+ gene-YPL257W-A_SA1 rna-NM_001184391.1_SA1 cds-NP_058190.1_SA1 80.4 80.4 Mismatch 1 1 0 False False True False False

Additional files