Gene name: YPL257W-A
Reference locus (S288C): YPL257W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): DMA1 (0.749); CLC1 (0.747); YPL257W (0.746); VHS2 (0.617); BDF2 (0.487); PXL1 (0.483); GLO3 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000150.1:123-1071:- | gene-YPL257W-A_JAY291 | rna-NM_001184391.1_JAY291 | cds-NP_058190.1_JAY291 | 71.6 | 71.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:1028453-1029775:- | gene-YPL257W-A_PE2H3 | rna-NM_001184391.1_PE2H3 | cds-NP_058190.1_PE2H3 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:1028197-1029519:- | gene-YPL257W-A_PE2H4 | rna-NM_001184391.1_PE2H4 | cds-NP_058190.1_PE2H4 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:56748-58070:+ | gene-YPL257W-A_S288C | rna-NM_001184391.1_S288C | cds-NP_058190.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000219.1:1-1064:+ | gene-YPL257W-A_SA1 | rna-NM_001184391.1_SA1 | cds-NP_058190.1_SA1 | 80.4 | 80.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |