Gene name: YPL225W
Reference locus (S288C): YPL225W
Gene biotype: protein_coding
Description: Protein PBDC1 homolog; Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress; Belongs to the PBDC1 family
Top 10 interactors (score): MGE1 (0.964); RBK1 (0.962); DUG1 (0.962); GUA1 (0.962); PRX1 (0.962); MAS2 (0.96); AIM29 (0.942); NOP10 (0.896); HGH1 (0.893); SDD2 (0.89); IMP3 (0.888); SMX2 (0.873); ERG10 (0.842); BAT1 (0.835); BAT2 (0.835); RQC1 (0.746); RPL42B (0.745); RPL42A (0.745); RPN11 (0.732); PHO88 (0.663)
Homologues (species, bitscore): PBDC1 (Homo sapiens, 115.5); Pbdc1 (Mus musculus, 119.8); pbdc1 (Danio rerio, 113.6); pbdc1 (Xenopus tropicalis, 120.9); CG7519 (Drosophila melanogaster, 113.6); Y54E5A.5 (Caenorhabditis elegans, 82.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:103785-104225:+ | gene-YPL225W_AKU4011 | rna-NM_001184039.1_AKU4011 | cds-NP_015099.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:309714-310154:+ | gene-YPL225W_BG1 | rna-NM_001184039.1_BG1 | cds-NP_015099.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:128984-129424:+ | gene-YPL225W_Bruggeman | rna-NM_001184039.1_Bruggeman | cds-NP_015099.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:126020-126460:+ | gene-YPL225W_CAT1 | rna-NM_001184039.1_CAT1 | cds-NP_015099.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:108098-108538:+ | gene-YPL225W_CBS1585 | rna-NM_001184039.1_CBS1585 | cds-NP_015099.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:122505-122945:+ | gene-YPL225W_CBS436 | rna-NM_001184039.1_CBS436 | cds-NP_015099.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:113263-113703:+ | gene-YPL225W_CBS6412 | rna-NM_001184039.1_CBS6412 | cds-NP_015099.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:104248-104688:+ | gene-YPL225W_CBS6413 | rna-NM_001184039.1_CBS6413 | cds-NP_015099.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:125934-126374:+ | gene-YPL225W_CENPK1137D | rna-NM_001184039.1_CENPK1137D | cds-NP_015099.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:103179-103619:+ | gene-YPL225W_EthanolRed | rna-NM_001184039.1_EthanolRed | cds-NP_015099.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:109986-110426:+ | gene-YPL225W_FaliES1 | rna-NM_001184039.1_FaliES1 | cds-NP_015099.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000293.1:107-547:- | gene-YPL225W_JAY291 | rna-NM_001184039.1_JAY291 | cds-NP_015099.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:120822-121262:+ | gene-YPL225W_MUCL30387 | rna-NM_001184039.1_MUCL30387 | cds-NP_015099.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:119260-119700:+ | gene-YPL225W_MUCL30388 | rna-NM_001184039.1_MUCL30388 | cds-NP_015099.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:101228-101668:+ | gene-YPL225W_MUCL39482 | rna-NM_001184039.1_MUCL39482 | cds-NP_015099.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:120088-120528:+ | gene-YPL225W_MUCL42920 | rna-NM_001184039.1_MUCL42920 | cds-NP_015099.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:125989-126429:+ | gene-YPL225W_NCIM3186 | rna-NM_001184039.1_NCIM3186 | cds-NP_015099.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:107674-108114:+ | gene-YPL225W_NCYC1407 | rna-NM_001184039.1_NCYC1407 | cds-NP_015099.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:115394-115834:+ | gene-YPL225W_PE2H3 | rna-NM_001184039.1_PE2H3 | cds-NP_015099.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:115037-115477:+ | gene-YPL225W_PE2H4 | rna-NM_001184039.1_PE2H4 | cds-NP_015099.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:126006-126446:+ | gene-YPL225W_S288C | rna-NM_001184039.1_S288C | cds-NP_015099.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:67901-68341:+ | gene-YPL225W_SA1 | rna-NM_001184039.1_SA1 | cds-NP_015099.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:109987-110427:+ | gene-YPL225W_ThermosaccDry | rna-NM_001184039.1_ThermosaccDry | cds-NP_015099.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:349859-350299:+ | gene-YPL225W_VR1 | rna-NM_001184039.1_VR1 | cds-NP_015099.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:109528-109968:+ | gene-YPL225W_ZTW1 | rna-NM_001184039.1_ZTW1 | cds-NP_015099.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:111082-111522:+ | gene-YPL225W_Sparadoxus | rna-NM_001184039.1_Sparadoxus | cds-NP_015099.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |