Gene name: YPL162C
Reference locus (S288C): YPL162C
Gene biotype: protein_coding
Description: Vacuolar membrane protein YPL162C; Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the membrane of vacuole with cell cycle-correlated morphology
Top 10 interactors (score): YMR253C (0.89); YLR050C (0.813); YPQ2 (0.766); VBA4 (0.744); NCR1 (0.731); ALK1 (0.698); SSH4 (0.697); TOS6 (0.697); YPQ1 (0.675); PRY3 (0.671); TAF2 (0.65); TUL1 (0.617); HMS2 (0.611); VCX1 (0.568); MSS18 (0.568); FTH1 (0.564); ZRT3 (0.552); USV1 (0.527); COT1 (0.526); YCF1 (0.489)
Homologues (species, bitscore): TMEM110 (Homo sapiens, 80.9); Tmem110 (Mus musculus, 82.4); tmem110l (Danio rerio, 84.3); tmem110 (Xenopus tropicalis, 77.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:220874-221695:- | gene-YPL162C_AKU4011 | rna-NM_001183976.1_AKU4011 | cds-NP_015163.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:426542-427363:- | gene-YPL162C_BG1 | rna-NM_001183976.1_BG1 | cds-NP_015163.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:246864-247685:- | gene-YPL162C_Bruggeman | rna-NM_001183976.1_Bruggeman | cds-NP_015163.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:243531-244352:- | gene-YPL162C_CAT1 | rna-NM_001183976.1_CAT1 | cds-NP_015163.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:224937-225758:- | gene-YPL162C_CBS1585 | rna-NM_001183976.1_CBS1585 | cds-NP_015163.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:239594-240415:- | gene-YPL162C_CBS436 | rna-NM_001183976.1_CBS436 | cds-NP_015163.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:229615-230436:- | gene-YPL162C_CBS6412 | rna-NM_001183976.1_CBS6412 | cds-NP_015163.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:221575-222396:- | gene-YPL162C_CBS6413 | rna-NM_001183976.1_CBS6413 | cds-NP_015163.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:243090-243911:- | gene-YPL162C_CENPK1137D | rna-NM_001183976.1_CENPK1137D | cds-NP_015163.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:219602-220423:- | gene-YPL162C_EthanolRed | rna-NM_001183976.1_EthanolRed | cds-NP_015163.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:227194-228015:- | gene-YPL162C_FaliES1 | rna-NM_001183976.1_FaliES1 | cds-NP_015163.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:137880-138701:+ | gene-YPL162C_JAY291 | rna-NM_001183976.1_JAY291 | cds-NP_015163.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:238107-238928:- | gene-YPL162C_MUCL30387 | rna-NM_001183976.1_MUCL30387 | cds-NP_015163.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:236121-236942:- | gene-YPL162C_MUCL30388 | rna-NM_001183976.1_MUCL30388 | cds-NP_015163.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:218266-219087:- | gene-YPL162C_MUCL39482 | rna-NM_001183976.1_MUCL39482 | cds-NP_015163.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:274995-275816:- | gene-YPL162C_MUCL42920 | rna-NM_001183976.1_MUCL42920 | cds-NP_015163.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:243189-244010:- | gene-YPL162C_NCIM3186 | rna-NM_001183976.1_NCIM3186 | cds-NP_015163.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:224723-225544:- | gene-YPL162C_NCYC1407 | rna-NM_001183976.1_NCYC1407 | cds-NP_015163.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:232156-232977:- | gene-YPL162C_PE2H3 | rna-NM_001183976.1_PE2H3 | cds-NP_015163.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:231799-232620:- | gene-YPL162C_PE2H4 | rna-NM_001183976.1_PE2H4 | cds-NP_015163.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:243206-244027:- | gene-YPL162C_S288C | rna-NM_001183976.1_S288C | cds-NP_015163.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:129655-130476:+ | gene-YPL162C_SA1 | rna-NM_001183976.1_SA1 | cds-NP_015163.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:226992-227813:- | gene-YPL162C_ThermosaccDry | rna-NM_001183976.1_ThermosaccDry | cds-NP_015163.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:241927-242748:- | gene-YPL162C_VR1 | rna-NM_001183976.1_VR1 | cds-NP_015163.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:226320-227141:- | gene-YPL162C_ZTW1 | rna-NM_001183976.1_ZTW1 | cds-NP_015163.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:227861-228682:- | gene-YPL162C_Sparadoxus | rna-NM_001183976.1_Sparadoxus | cds-NP_015163.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |