Gene name: YPL113C
Reference locus (S288C): YPL113C
Gene biotype: protein_coding
Description: Putative 2-hydroxyacid dehydrogenase YPL113C; Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene
Top 10 interactors (score): AGX1 (0.928); DAL7 (0.746); PGA2 (0.68); PHO13 (0.558); TDA10 (0.534); URA6 (0.511); ICL1 (0.485); SSK22 (0.451); MAE1 (0.423); CYB2 (0.418)
Homologues (species, bitscore): PHGDH (Homo sapiens, 84.7); Phgdh (Mus musculus, 83.6); phgdh (Danio rerio, 87.0); phgdh (Xenopus tropicalis, 81.3); CG6287 (Drosophila melanogaster, 90.9); C31C9.2 (Caenorhabditis elegans, 79.0); HPR3 (Arabidopsis thaliana, 87.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:313592-314782:- | gene-YPL113C_AKU4011 | rna-NM_001183927.1_AKU4011 | cds-NP_015212.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:519349-520539:- | gene-YPL113C_BG1 | rna-NM_001183927.1_BG1 | cds-NP_015212.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:339598-340788:- | gene-YPL113C_Bruggeman | rna-NM_001183927.1_Bruggeman | cds-NP_015212.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:336265-337455:- | gene-YPL113C_CAT1 | rna-NM_001183927.1_CAT1 | cds-NP_015212.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:317665-318855:- | gene-YPL113C_CBS1585 | rna-NM_001183927.1_CBS1585 | cds-NP_015212.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:332341-333531:- | gene-YPL113C_CBS436 | rna-NM_001183927.1_CBS436 | cds-NP_015212.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:322334-323524:- | gene-YPL113C_CBS6412 | rna-NM_001183927.1_CBS6412 | cds-NP_015212.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:314301-315491:- | gene-YPL113C_CBS6413 | rna-NM_001183927.1_CBS6413 | cds-NP_015212.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:335902-337092:- | gene-YPL113C_CENPK1137D | rna-NM_001183927.1_CENPK1137D | cds-NP_015212.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:312282-313472:- | gene-YPL113C_EthanolRed | rna-NM_001183927.1_EthanolRed | cds-NP_015212.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:319874-321064:- | gene-YPL113C_FaliES1 | rna-NM_001183927.1_FaliES1 | cds-NP_015212.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:44752-45942:+ | gene-YPL113C_JAY291 | rna-NM_001183927.1_JAY291 | cds-NP_015212.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:330837-332027:- | gene-YPL113C_MUCL30387 | rna-NM_001183927.1_MUCL30387 | cds-NP_015212.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:329108-330298:- | gene-YPL113C_MUCL30388 | rna-NM_001183927.1_MUCL30388 | cds-NP_015212.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:310994-312184:- | gene-YPL113C_MUCL39482 | rna-NM_001183927.1_MUCL39482 | cds-NP_015212.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:368237-369427:- | gene-YPL113C_MUCL42920 | rna-NM_001183927.1_MUCL42920 | cds-NP_015212.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:335936-337126:- | gene-YPL113C_NCIM3186 | rna-NM_001183927.1_NCIM3186 | cds-NP_015212.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:317447-318637:- | gene-YPL113C_NCYC1407 | rna-NM_001183927.1_NCYC1407 | cds-NP_015212.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:324940-326130:- | gene-YPL113C_PE2H3 | rna-NM_001183927.1_PE2H3 | cds-NP_015212.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:324563-325753:- | gene-YPL113C_PE2H4 | rna-NM_001183927.1_PE2H4 | cds-NP_015212.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:335953-337143:- | gene-YPL113C_S288C | rna-NM_001183927.1_S288C | cds-NP_015212.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:36538-37728:+ | gene-YPL113C_SA1 | rna-NM_001183927.1_SA1 | cds-NP_015212.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:319672-320862:- | gene-YPL113C_ThermosaccDry | rna-NM_001183927.1_ThermosaccDry | cds-NP_015212.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:334652-335842:- | gene-YPL113C_VR1 | rna-NM_001183927.1_VR1 | cds-NP_015212.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:318997-320187:- | gene-YPL113C_ZTW1 | rna-NM_001183927.1_ZTW1 | cds-NP_015212.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:320704-321894:- | gene-YPL113C_Sparadoxus | rna-NM_001183927.1_Sparadoxus | cds-NP_015212.1_Sparadoxus | 87.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |