Gene name: YPK3
Reference locus (S288C): YBR028C
Gene biotype: protein_coding
Description: Serine/threonine-protein kinase YPK3; AGC kinase; phosphorylated by cAMP-dependent protein kinase (PKA) in a TORC1-dependent manner; directly phosphorylated by TORC1; phosphorylates ribosomal protein Rps6a/b (S6), in a TORC-dependent manner; undergoes autophosphorylation
Top 10 interactors (score): RPS6B (0.987); TOR1 (0.968); TIF4632 (0.961); TIF4631 (0.961); TOR2 (0.945); KOG1 (0.935); SCH9 (0.924); YPK1 (0.91); LST8 (0.845); RPS6A (0.829); GTR2 (0.809); TSC11 (0.804); GTR1 (0.801); CDC33 (0.77); RHB1 (0.755); PKH1 (0.74); TIF3 (0.731); AVO1 (0.727); PKH3 (0.724); PKH2 (0.719)
Homologues (species, bitscore): RPS6KB1 (Homo sapiens, 246.9); Rps6kb1 (Mus musculus, 246.9); rps6kb1b (Danio rerio, 243.8); rps6kb1 (Xenopus tropicalis, 243.0); S6k (Drosophila melanogaster, 219.5); rsks-1 (Caenorhabditis elegans, 218.8); S6K2 (Arabidopsis thaliana, 220.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:276861-278438:- | gene-YBR028C_AKU4011 | rna-NM_001178376.1_AKU4011 | cds-NP_009584.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:267009-268586:- | gene-YBR028C_BG1 | rna-NM_001178376.1_BG1 | cds-NP_009584.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:480278-481855:- | gene-YBR028C_Bruggeman | rna-NM_001178376.1_Bruggeman | cds-NP_009584.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:281024-282601:- | gene-YBR028C_CAT1 | rna-NM_001178376.1_CAT1 | cds-NP_009584.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:268898-270475:- | gene-YBR028C_CBS1585 | rna-NM_001178376.1_CBS1585 | cds-NP_009584.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:277158-278735:- | gene-YBR028C_CBS436 | rna-NM_001178376.1_CBS436 | cds-NP_009584.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:367402-368979:- | gene-YBR028C_CBS6412 | rna-NM_001178376.1_CBS6412 | cds-NP_009584.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:274266-275843:- | gene-YBR028C_CBS6413 | rna-NM_001178376.1_CBS6413 | cds-NP_009584.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:288175-289752:- | gene-YBR028C_CENPK1137D | rna-NM_001178376.1_CENPK1137D | cds-NP_009584.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:403874-405451:- | gene-YBR028C_EthanolRed | rna-NM_001178376.1_EthanolRed | cds-NP_009584.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:291969-293546:- | gene-YBR028C_FaliES1 | rna-NM_001178376.1_FaliES1 | cds-NP_009584.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:4052-5629:+ | gene-YBR028C_JAY291 | rna-NM_001178376.1_JAY291 | cds-NP_009584.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:278187-279764:- | gene-YBR028C_MUCL30387 | rna-NM_001178376.1_MUCL30387 | cds-NP_009584.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:278442-280019:- | gene-YBR028C_MUCL30388 | rna-NM_001178376.1_MUCL30388 | cds-NP_009584.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:268880-270457:- | gene-YBR028C_MUCL39482 | rna-NM_001178376.1_MUCL39482 | cds-NP_009584.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:276330-277907:- | gene-YBR028C_MUCL42920 | rna-NM_001178376.1_MUCL42920 | cds-NP_009584.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:294222-295799:- | gene-YBR028C_NCIM3186 | rna-NM_001178376.1_NCIM3186 | cds-NP_009584.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:270057-271634:- | gene-YBR028C_NCYC1407 | rna-NM_001178376.1_NCYC1407 | cds-NP_009584.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:282234-283811:- | gene-YBR028C_PE2H3 | rna-NM_001178376.1_PE2H3 | cds-NP_009584.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:279902-281479:- | gene-YBR028C_PE2H4 | rna-NM_001178376.1_PE2H4 | cds-NP_009584.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:294425-296002:- | gene-YBR028C_S288C | rna-NM_001178376.1_S288C | cds-NP_009584.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:12701-14278:+ | gene-YBR028C_SA1 | rna-NM_001178376.1_SA1 | cds-NP_009584.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:291677-293254:- | gene-YBR028C_ThermosaccDry | rna-NM_001178376.1_ThermosaccDry | cds-NP_009584.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:273586-275163:- | gene-YBR028C_VR1 | rna-NM_001178376.1_VR1 | cds-NP_009584.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:267657-269234:- | gene-YBR028C_ZTW1 | rna-NM_001178376.1_ZTW1 | cds-NP_009584.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:303883-305460:- | gene-YBR028C_Sparadoxus | rna-NM_001178376.1_Sparadoxus | cds-NP_009584.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |