Gene name: YPC1
Reference locus (S288C): YBR183W
Gene biotype: protein_coding
Description: Alkaline ceramidase; also has reverse (CoA-independent) ceramide synthase activity; catalyzes both breakdown and synthesis of phytoceramide; overexpression confers fumonisin B1 resistance; YPC1 has a paralog, YDC1, that arose from the whole genome duplication
Top 10 interactors (score): ISC1 (0.992); LAC1 (0.989); LAG1 (0.988); LCB5 (0.985); LCB4 (0.98); SUR2 (0.973); LCB1 (0.919); PIC2 (0.916); YSR3 (0.896); DPL1 (0.894); LCB2 (0.892); AUR1 (0.813); LCB3 (0.786); LIP1 (0.717); TDA4 (0.716); YPR114W (0.716); IPT1 (0.716); ORM1 (0.699); SCH9 (0.676); KEI1 (0.651)
Homologues (species, bitscore): ACER3 (Homo sapiens, 145.2); Acer3 (Mus musculus, 149.1); LOC555411 (Danio rerio, 149.8); acer3 (Xenopus tropicalis, 152.5); bwa (Drosophila melanogaster, 51.6); ATCES1 (Arabidopsis thaliana, 75.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:579484-580434:+ | gene-YBR183W_AKU4011 | rna-NM_001178531.1_AKU4011 | cds-NP_009742.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:569465-570415:+ | gene-YBR183W_BG1 | rna-NM_001178531.1_BG1 | cds-NP_009742.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:385344-386294:+ | gene-YBR183W_Bruggeman | rna-NM_001178531.1_Bruggeman | cds-NP_009742.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:584750-585700:+ | gene-YBR183W_CAT1 | rna-NM_001178531.1_CAT1 | cds-NP_009742.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:571265-572215:+ | gene-YBR183W_CBS1585 | rna-NM_001178531.1_CBS1585 | cds-NP_009742.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:578817-579767:+ | gene-YBR183W_CBS436 | rna-NM_001178531.1_CBS436 | cds-NP_009742.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:667873-668823:+ | gene-YBR183W_CBS6412 | rna-NM_001178531.1_CBS6412 | cds-NP_009742.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:577070-578020:+ | gene-YBR183W_CBS6413 | rna-NM_001178531.1_CBS6413 | cds-NP_009742.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:589889-590839:+ | gene-YBR183W_CENPK1137D | rna-NM_001178531.1_CENPK1137D | cds-NP_009742.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:704641-705591:+ | gene-YBR183W_EthanolRed | rna-NM_001178531.1_EthanolRed | cds-NP_009742.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:595552-596502:+ | gene-YBR183W_FaliES1 | rna-NM_001178531.1_FaliES1 | cds-NP_009742.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000104.1:9741-10691:- | gene-YBR183W_JAY291 | rna-NM_001178531.1_JAY291 | cds-NP_009742.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:584025-584975:+ | gene-YBR183W_MUCL30387 | rna-NM_001178531.1_MUCL30387 | cds-NP_009742.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:601100-602050:+ | gene-YBR183W_MUCL30388 | rna-NM_001178531.1_MUCL30388 | cds-NP_009742.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:569638-570588:+ | gene-YBR183W_MUCL39482 | rna-NM_001178531.1_MUCL39482 | cds-NP_009742.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:579060-580010:+ | gene-YBR183W_MUCL42920 | rna-NM_001178531.1_MUCL42920 | cds-NP_009742.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:595912-596862:+ | gene-YBR183W_NCIM3186 | rna-NM_001178531.1_NCIM3186 | cds-NP_009742.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:571746-572696:+ | gene-YBR183W_NCYC1407 | rna-NM_001178531.1_NCYC1407 | cds-NP_009742.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:584337-585287:+ | gene-YBR183W_PE2H3 | rna-NM_001178531.1_PE2H3 | cds-NP_009742.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:582013-582963:+ | gene-YBR183W_PE2H4 | rna-NM_001178531.1_PE2H4 | cds-NP_009742.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:596115-597065:+ | gene-YBR183W_S288C | rna-NM_001178531.1_S288C | cds-NP_009742.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000080.1:3812-4762:+ | gene-YBR183W_SA1 | rna-NM_001178531.1_SA1 | cds-NP_009742.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:594562-595512:+ | gene-YBR183W_ThermosaccDry | rna-NM_001178531.1_ThermosaccDry | cds-NP_009742.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:575737-576687:+ | gene-YBR183W_VR1 | rna-NM_001178531.1_VR1 | cds-NP_009742.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:569180-570130:+ | gene-YBR183W_ZTW1 | rna-NM_001178531.1_ZTW1 | cds-NP_009742.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:610944-611894:+ | gene-YBR183W_Sparadoxus | rna-NM_001178531.1_Sparadoxus | cds-NP_009742.1_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |