Gene name: YOX1
Reference locus (S288C): YML027W
Gene biotype: protein_coding
Description: Homeobox protein YOX1; Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; phosphorylated by Cdc28p; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a paralog, YHP1, that arose from the whole genome duplication
Top 10 interactors (score): MCM1 (0.999); PCL1 (0.95); FKH2 (0.942); HCM1 (0.935); YHP1 (0.934); CDC28 (0.929); CLN1 (0.887); CLB6 (0.874); MBP1 (0.872); FKH1 (0.855); NDD1 (0.849); SWI4 (0.841); SWI6 (0.819); TOS4 (0.809); NRM1 (0.8); SWI5 (0.786); RNR1 (0.767); STB1 (0.76); WHI5 (0.748); ACE2 (0.747)
Homologues (species, bitscore): POU3F3 (Homo sapiens, 54.7); Pou3f3 (Mus musculus, 54.7); pou3f3b (Danio rerio, 54.7); pou5f3.2 (Xenopus tropicalis, 55.8); CG4328 (Drosophila melanogaster, 56.6); php-3 (Caenorhabditis elegans, 55.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:271000-272157:+ | gene-YML027W_AKU4011 | rna-NM_001182385.1_AKU4011 | cds-NP_013685.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:270716-271873:- | gene-YML027W_BG1 | rna-NM_001182385.1_BG1 | cds-NP_013685.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:210952-212109:+ | gene-YML027W_Bruggeman | rna-NM_001182385.1_Bruggeman | cds-NP_013685.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:213465-214622:+ | gene-YML027W_CAT1 | rna-NM_001182385.1_CAT1 | cds-NP_013685.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:203949-205106:+ | gene-YML027W_CBS1585 | rna-NM_001182385.1_CBS1585 | cds-NP_013685.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:209485-210642:+ | gene-YML027W_CBS436 | rna-NM_001182385.1_CBS436 | cds-NP_013685.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:317686-318843:+ | gene-YML027W_CBS6412 | rna-NM_001182385.1_CBS6412 | cds-NP_013685.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:203207-204364:+ | gene-YML027W_CBS6413 | rna-NM_001182385.1_CBS6413 | cds-NP_013685.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:215927-217084:+ | gene-YML027W_CENPK1137D | rna-NM_001182385.1_CENPK1137D | cds-NP_013685.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:203974-205131:+ | gene-YML027W_EthanolRed | rna-NM_001182385.1_EthanolRed | cds-NP_013685.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:206938-208095:+ | gene-YML027W_FaliES1 | rna-NM_001182385.1_FaliES1 | cds-NP_013685.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:4042-5199:- | gene-YML027W_JAY291 | rna-NM_001182385.1_JAY291 | cds-NP_013685.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:208684-209841:+ | gene-YML027W_MUCL30387 | rna-NM_001182385.1_MUCL30387 | cds-NP_013685.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:212661-213818:+ | gene-YML027W_MUCL30388 | rna-NM_001182385.1_MUCL30388 | cds-NP_013685.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:204235-205392:+ | gene-YML027W_MUCL39482 | rna-NM_001182385.1_MUCL39482 | cds-NP_013685.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:209790-210947:+ | gene-YML027W_MUCL42920 | rna-NM_001182385.1_MUCL42920 | cds-NP_013685.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:221360-222517:+ | gene-YML027W_NCIM3186 | rna-NM_001182385.1_NCIM3186 | cds-NP_013685.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:204176-205333:+ | gene-YML027W_NCYC1407 | rna-NM_001182385.1_NCYC1407 | cds-NP_013685.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:210076-211233:+ | gene-YML027W_PE2H3 | rna-NM_001182385.1_PE2H3 | cds-NP_013685.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:216171-217328:+ | gene-YML027W_PE2H4 | rna-NM_001182385.1_PE2H4 | cds-NP_013685.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:221406-222563:+ | gene-YML027W_S288C | rna-NM_001182385.1_S288C | cds-NP_013685.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:16288-17445:- | gene-YML027W_SA1 | rna-NM_001182385.1_SA1 | cds-NP_013685.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:204011-205168:+ | gene-YML027W_ThermosaccDry | rna-NM_001182385.1_ThermosaccDry | cds-NP_013685.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:208017-209174:+ | gene-YML027W_VR1 | rna-NM_001182385.1_VR1 | cds-NP_013685.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:183066-184223:+ | gene-YML027W_ZTW1 | rna-NM_001182385.1_ZTW1 | cds-NP_013685.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:214787-215941:+ | gene-YML027W_Sparadoxus | rna-NM_001182385.1_Sparadoxus | cds-NP_013685.1_Sparadoxus | 90.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |