YOR343W-B (YOR343W-B)

Gene profile

Gene name: YOR343W-B
Reference locus (S288C): YOR343W-B
Gene biotype: protein_coding

Description: Transposon Ty2-OR2 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 96.3)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000251.1:1-950:- gene-YOR343W-B_CAT1 rna-NM_001184390.4_CAT1 cds-NP_620389.3_CAT1 17.8 17.8 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:970467-975780:+ gene-YOR343W-B_NCIM3186 rna-NM_001184390.4_NCIM3186 cds-NP_620389.3_NCIM3186 99.0 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994142.1:233276-238589:- gene-YOR343W-B_PE2H3 rna-NM_001184390.4_PE2H3 cds-NP_620389.3_PE2H3 99.5 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999886.1:845673-850986:+ gene-YOR343W-B_PE2H4 rna-NM_001184390.4_PE2H4 cds-NP_620389.3_PE2H4 99.5 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:970578-975891:+ gene-YOR343W-B_S288C rna-NM_001184390.4_S288C cds-NP_620389.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files