YOR343W-A (YOR343W-A)

Gene profile

Gene name: YOR343W-A
Reference locus (S288C): YOR343W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): AAD10 (0.65); AAD6 (0.611); PMA2 (0.595); GTT2 (0.571); AQR1 (0.565); SRX1 (0.553); FLR1 (0.526); GPX2 (0.473)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:970467-971783:+ gene-YOR343W-A_NCIM3186 rna-NM_001184389.1_NCIM3186 cds-NP_620390.1_NCIM3186 97.3 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994141.1:191407-192723:+ gene-YOR343W-A_PE2H3 rna-NM_001184389.1_PE2H3 cds-NP_620390.1_PE2H3 99.3 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999873.1:189051-190367:+ gene-YOR343W-A_PE2H4 rna-NM_001184389.1_PE2H4 cds-NP_620390.1_PE2H4 99.3 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:970578-971894:+ gene-YOR343W-A_S288C rna-NM_001184389.1_S288C cds-NP_620390.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files