Gene name: YOR192C-B
Reference locus (S288C): YOR192C-B
Gene biotype: protein_coding
Description: Transposon Ty2-OR1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): ENSDARP00000105592 (Danio rerio, 52.4); CRK8 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000371.1:1-2578:+ | gene-YOR192C-B_Bruggeman | rna-NM_001184388.4_Bruggeman | cds-NP_058185.3_Bruggeman | 48.3 | 48.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000086.1:1-2171:+ | gene-YOR192C-B_JAY291 | rna-NM_001184388.4_JAY291 | cds-NP_058185.3_JAY291 | 40.7 | 40.8 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | MBVX01000243.1:1-2723:+ | gene-YOR192C-B_MUCL30387 | rna-NM_001184388.4_MUCL30387 | cds-NP_058185.3_MUCL30387 | 51.0 | 51.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000070.1:1-695:+ | gene-YOR192C-B_MUCL42920 | rna-NM_001184388.4_MUCL42920 | cds-NP_058185.3_MUCL42920 | 12.9 | 13.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:704308-709621:- | gene-YOR192C-B_NCIM3186 | rna-NM_001184388.4_NCIM3186 | cds-NP_058185.3_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:663869-669182:+ | gene-YOR192C-B_PE2H3 | rna-NM_001184388.4_PE2H3 | cds-NP_058185.3_PE2H3 | 97.3 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:851648-856961:+ | gene-YOR192C-B_PE2H4 | rna-NM_001184388.4_PE2H4 | cds-NP_058185.3_PE2H4 | 99.5 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:704419-709732:- | gene-YOR192C-B_S288C | rna-NM_001184388.4_S288C | cds-NP_058185.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000188.1:1-1629:+ | gene-YOR192C-B_SA1 | rna-NM_001184388.4_SA1 | cds-NP_058185.3_SA1 | 30.5 | 30.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000210.1:1-1261:- | gene-YOR192C-B_VR1 | rna-NM_001184388.4_VR1 | cds-NP_058185.3_VR1 | 23.6 | 23.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |