YOR192C-A (YOR192C-A)

Gene profile

Gene name: YOR192C-A
Reference locus (S288C): YOR192C-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000371.1:1-1236:+ gene-YOR192C-A_Bruggeman rna-NM_001184387.1_Bruggeman cds-NP_058186.1_Bruggeman 93.5 93.8 Verified 1 1 0 False False True False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000086.1:1-832:+ gene-YOR192C-A_JAY291 rna-NM_001184387.1_JAY291 cds-NP_058186.1_JAY291 63.0 63.1 Unannotated 1 1 0 False False True False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000103.1:1746-3023:- gene-YOR192C-A_MUCL30387 rna-NM_001184387.1_MUCL30387 cds-NP_058186.1_MUCL30387 96.6 97.0 Verified 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:708305-709621:- gene-YOR192C-A_NCIM3186 rna-NM_001184387.1_NCIM3186 cds-NP_058186.1_NCIM3186 99.9 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:663869-665185:+ gene-YOR192C-A_PE2H3 rna-NM_001184387.1_PE2H3 cds-NP_058186.1_PE2H3 96.7 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:851648-852964:+ gene-YOR192C-A_PE2H4 rna-NM_001184387.1_PE2H4 cds-NP_058186.1_PE2H4 99.0 99.6 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:708416-709732:- gene-YOR192C-A_S288C rna-NM_001184387.1_S288C cds-NP_058186.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000188.1:1-369:+ gene-YOR192C-A_SA1 rna-NM_001184387.1_SA1 cds-NP_058186.1_SA1 28.0 28.0 Mismatch 1 1 0 False False True False False

Additional files