YOR142W-B (YOR142W-B)

Gene profile

Gene name: YOR142W-B
Reference locus (S288C): YOR142W-B
Gene biotype: protein_coding

Description: Transposon Ty1-OR Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 93.2)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:595001-600269:+ gene-YOR142W-B_NCIM3186 rna-NM_001184386.2_NCIM3186 cds-NP_058183.1_NCIM3186 90.7 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:595112-600380:+ gene-YOR142W-B_S288C rna-NM_001184386.2_S288C cds-NP_058183.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000221.1:1-931:+ gene-YOR142W-B_VR1 rna-NM_001184386.2_VR1 cds-NP_058183.1_VR1 17.2 17.6 Mismatch 1 1 0 False False True False False

Additional files