Gene name: YOR142W-B
Reference locus (S288C): YOR142W-B
Gene biotype: protein_coding
Description: Transposon Ty1-OR Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 93.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:595001-600269:+ | gene-YOR142W-B_NCIM3186 | rna-NM_001184386.2_NCIM3186 | cds-NP_058183.1_NCIM3186 | 90.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:595112-600380:+ | gene-YOR142W-B_S288C | rna-NM_001184386.2_S288C | cds-NP_058183.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000221.1:1-931:+ | gene-YOR142W-B_VR1 | rna-NM_001184386.2_VR1 | cds-NP_058183.1_VR1 | 17.2 | 17.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |