YOL103W-B (YOL103W-B)

Gene profile

Gene name: YOL103W-B
Reference locus (S288C): YOL103W-B
Gene biotype: protein_coding

Description: Transposon Ty1-OL Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): HTB1 (0.483)

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 91.3)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000016.1:1-530:- gene-YOL103W-B_CAT1 rna-NM_001184384.2_CAT1 cds-NP_058181.1_CAT1 10.0 10.0 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994153.1:87795-93063:- gene-YOL103W-B_PE2H3 rna-NM_001184384.2_PE2H3 cds-NP_058181.1_PE2H3 98.6 100.0 Mismatch 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999885.1:87183-92451:- gene-YOL103W-B_PE2H4 rna-NM_001184384.2_PE2H4 cds-NP_058181.1_PE2H4 98.6 100.0 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:118000-123268:+ gene-YOL103W-B_S288C rna-NM_001184384.2_S288C cds-NP_058181.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files