Gene name: YNR048W
Reference locus (S288C): YNR048W
Gene biotype: protein_coding
Description: Potential noncatalytic subunit for phospholipid translocase Dnf3p; YNR048W has a paralog, CDC50, that arose from the whole genome duplication; Belongs to the CDC50/LEM3 family
Top 10 interactors (score): DNF3 (0.979); GCN1 (0.918); DNF2 (0.895); DNF1 (0.89); NEO1 (0.876); APT2 (0.836); DRS2 (0.692); NOC4 (0.537); CDC50 (0.504); LEM3 (0.488); HGH1 (0.487); DCC1 (0.487); NNR2 (0.487); MRPS28 (0.469); KTR7 (0.468); KTR5 (0.468); HNT2 (0.46); ALG2 (0.449); CHO1 (0.432); TRM112 (0.408)
Homologues (species, bitscore): TMEM30A (Homo sapiens, 192.2); Tmem30a (Mus musculus, 193.0); tmem30ab (Danio rerio, 201.1); tmem30a (Xenopus tropicalis, 198.7); CG9947 (Drosophila melanogaster, 183.0); chat-1 (Caenorhabditis elegans, 178.7); AT1G54320 (Arabidopsis thaliana, 172.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:238685-239866:- | gene-YNR048W_AKU4011 | rna-NM_001183225.3_AKU4011 | cds-NP_014446.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:603169-604350:+ | gene-YNR048W_BG1 | rna-NM_001183225.3_BG1 | cds-NP_014446.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:712950-714131:+ | gene-YNR048W_Bruggeman | rna-NM_001183225.3_Bruggeman | cds-NP_014446.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:746921-748102:+ | gene-YNR048W_CAT1 | rna-NM_001183225.3_CAT1 | cds-NP_014446.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:701171-702352:+ | gene-YNR048W_CBS1585 | rna-NM_001183225.3_CBS1585 | cds-NP_014446.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:762714-763895:+ | gene-YNR048W_CBS436 | rna-NM_001183225.3_CBS436 | cds-NP_014446.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:690149-691330:+ | gene-YNR048W_CBS6412 | rna-NM_001183225.3_CBS6412 | cds-NP_014446.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:691834-693015:+ | gene-YNR048W_CBS6413 | rna-NM_001183225.3_CBS6413 | cds-NP_014446.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:705374-706555:+ | gene-YNR048W_CENPK1137D | rna-NM_001183225.3_CENPK1137D | cds-NP_014446.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:696813-697994:+ | gene-YNR048W_EthanolRed | rna-NM_001183225.3_EthanolRed | cds-NP_014446.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:688016-689197:+ | gene-YNR048W_FaliES1 | rna-NM_001183225.3_FaliES1 | cds-NP_014446.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:13445-14626:- | gene-YNR048W_JAY291 | rna-NM_001183225.3_JAY291 | cds-NP_014446.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:710878-712059:+ | gene-YNR048W_MUCL30387 | rna-NM_001183225.3_MUCL30387 | cds-NP_014446.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:751938-753119:+ | gene-YNR048W_MUCL30388 | rna-NM_001183225.3_MUCL30388 | cds-NP_014446.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:692640-693821:+ | gene-YNR048W_MUCL39482 | rna-NM_001183225.3_MUCL39482 | cds-NP_014446.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:697351-698532:+ | gene-YNR048W_MUCL42920 | rna-NM_001183225.3_MUCL42920 | cds-NP_014446.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:711599-712780:+ | gene-YNR048W_NCIM3186 | rna-NM_001183225.3_NCIM3186 | cds-NP_014446.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:695158-696339:+ | gene-YNR048W_NCYC1407 | rna-NM_001183225.3_NCYC1407 | cds-NP_014446.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:696022-697203:+ | gene-YNR048W_PE2H3 | rna-NM_001183225.3_PE2H3 | cds-NP_014446.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:697424-698605:+ | gene-YNR048W_PE2H4 | rna-NM_001183225.3_PE2H4 | cds-NP_014446.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:711630-712811:+ | gene-YNR048W_S288C | rna-NM_001183225.3_S288C | cds-NP_014446.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000074.1:13507-14688:- | gene-YNR048W_SA1 | rna-NM_001183225.3_SA1 | cds-NP_014446.3_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:688353-689534:+ | gene-YNR048W_ThermosaccDry | rna-NM_001183225.3_ThermosaccDry | cds-NP_014446.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:730481-731662:+ | gene-YNR048W_VR1 | rna-NM_001183225.3_VR1 | cds-NP_014446.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:598128-599309:+ | gene-YNR048W_ZTW1 | rna-NM_001183225.3_ZTW1 | cds-NP_014446.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:702570-703751:+ | gene-YNR048W_Sparadoxus | rna-NM_001183225.3_Sparadoxus | cds-NP_014446.3_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |