YNL284C-B (YNL284C-B)

Gene profile

Gene name: YNL284C-B
Reference locus (S288C): YNL284C-B
Gene biotype: protein_coding

Description: Transposon Ty1-NL1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Top 10 interactors (score): Unknown

Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:954075-958928:- gene-YNL284C-B_CAT1 rna-NM_001184415.2_CAT1 cds-NP_058178.1_CAT1 53.1 78.0 Unannotated 1 1 0 False False True False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001535.1:94776-95484:- gene-YNL284C-B_CENPK1137D rna-NM_001184415.2_CENPK1137D cds-NP_058178.1_CENPK1137D 13.4 13.4 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:259666-264937:+ gene-YNL284C-B_NCIM3186 rna-NM_001184415.2_NCIM3186 cds-NP_058178.1_NCIM3186 85.7 99.8 Mismatch 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001146.8:96964-102232:- gene-YNL284C-B_S288C rna-NM_001184415.2_S288C cds-NP_058178.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000023.1:1-717:+ gene-YNL284C-B_ThermosaccDry rna-NM_001184415.2_ThermosaccDry cds-NP_058178.1_ThermosaccDry 13.3 13.5 Mismatch 1 1 0 False False True False False

Additional files