Gene name: YNL284C-B
Reference locus (S288C): YNL284C-B
Gene biotype: protein_coding
Description: Transposon Ty1-NL1 Gag-Pol polyprotein; Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes
Top 10 interactors (score): Unknown
Homologues (species, bitscore): CRK8 (Arabidopsis thaliana, 95.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:954075-958928:- | gene-YNL284C-B_CAT1 | rna-NM_001184415.2_CAT1 | cds-NP_058178.1_CAT1 | 53.1 | 78.0 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:94776-95484:- | gene-YNL284C-B_CENPK1137D | rna-NM_001184415.2_CENPK1137D | cds-NP_058178.1_CENPK1137D | 13.4 | 13.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:259666-264937:+ | gene-YNL284C-B_NCIM3186 | rna-NM_001184415.2_NCIM3186 | cds-NP_058178.1_NCIM3186 | 85.7 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:96964-102232:- | gene-YNL284C-B_S288C | rna-NM_001184415.2_S288C | cds-NP_058178.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000023.1:1-717:+ | gene-YNL284C-B_ThermosaccDry | rna-NM_001184415.2_ThermosaccDry | cds-NP_058178.1_ThermosaccDry | 13.3 | 13.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |