Gene name: YNL284C-A
Reference locus (S288C): YNL284C-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): Unknown
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | MBVO01000027.1:1-347:- | gene-YNL284C-A_AKU4011 | rna-NM_001184414.1_AKU4011 | cds-NP_058179.1_AKU4011 | 25.9 | 26.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:957601-958928:- | gene-YNL284C-A_CAT1 | rna-NM_001184414.1_CAT1 | cds-NP_058179.1_CAT1 | 85.3 | 99.2 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000074.1:1-347:- | gene-YNL284C-A_CBS1585 | rna-NM_001184414.1_CBS1585 | cds-NP_058179.1_CBS1585 | 25.9 | 26.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:955949-957277:- | gene-YNL284C-A_CBS6413 | rna-NM_001184414.1_CBS6413 | cds-NP_058179.1_CBS6413 | 85.2 | 99.2 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:94743-96065:- | gene-YNL284C-A_CENPK1137D | rna-NM_001184414.1_CENPK1137D | cds-NP_058179.1_CENPK1137D | 53.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:869259-870586:- | gene-YNL284C-A_MUCL42920 | rna-NM_001184414.1_MUCL42920 | cds-NP_058179.1_MUCL42920 | 85.2 | 99.2 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:480253-481575:- | gene-YNL284C-A_NCIM3186 | rna-NM_001184414.1_NCIM3186 | cds-NP_058179.1_NCIM3186 | 65.7 | 99.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:943125-944454:- | gene-YNL284C-A_NCYC1407 | rna-NM_001184414.1_NCYC1407 | cds-NP_058179.1_NCYC1407 | 71.8 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:100910-102232:- | gene-YNL284C-A_S288C | rna-NM_001184414.1_S288C | cds-NP_058179.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | MBWA01000023.1:1-655:+ | gene-YNL284C-A_ThermosaccDry | rna-NM_001184414.1_ThermosaccDry | cds-NP_058179.1_ThermosaccDry | 48.6 | 49.5 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | MBVZ01000091.1:1-234:+ | gene-YNL284C-A_VR1 | rna-NM_001184414.1_VR1 | cds-NP_058179.1_VR1 | 17.4 | 17.6 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |