Gene name: YNL140C
Reference locus (S288C): YNL140C
Gene biotype: protein_coding
Description: Uncharacterized protein YNL140C; Protein of unknown function; expressed at both mRNA and protein levels; partially overlaps THO2/YNL139C
Top 10 interactors (score): YHR173C (0.851); YIL054W (0.851); YOR105W (0.817); YER084W (0.814); YLR358C (0.813); N1795 (0.78); YNL184C (0.78); YJR146W (0.767); YPR089W (0.749); JIP4 (0.748); TPH3 (0.746); YEL068C (0.711); YOR318C (0.651); SUB2 (0.633); THP2 (0.616); YVC1 (0.615); LSB3 (0.575); BBC1 (0.568); SWH1 (0.565); THO2 (0.523)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:354602-355171:- | gene-YNL140C_AKU4011 | rna-NM_001270760.1_AKU4011 | cds-NP_001257689.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:258594-259163:- | gene-YNL140C_BG1 | rna-NM_001270760.1_BG1 | cds-NP_001257689.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:364699-365268:- | gene-YNL140C_Bruggeman | rna-NM_001270760.1_Bruggeman | cds-NP_001257689.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:407593-408162:- | gene-YNL140C_CAT1 | rna-NM_001270760.1_CAT1 | cds-NP_001257689.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:355221-355790:- | gene-YNL140C_CBS1585 | rna-NM_001270760.1_CBS1585 | cds-NP_001257689.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:423616-424185:- | gene-YNL140C_CBS436 | rna-NM_001270760.1_CBS436 | cds-NP_001257689.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:350675-351244:- | gene-YNL140C_CBS6412 | rna-NM_001270760.1_CBS6412 | cds-NP_001257689.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:351639-352208:- | gene-YNL140C_CBS6413 | rna-NM_001270760.1_CBS6413 | cds-NP_001257689.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:354769-355338:- | gene-YNL140C_CENPK1137D | rna-NM_001270760.1_CENPK1137D | cds-NP_001257689.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:351593-352162:- | gene-YNL140C_EthanolRed | rna-NM_001270760.1_EthanolRed | cds-NP_001257689.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:347495-348064:- | gene-YNL140C_FaliES1 | rna-NM_001270760.1_FaliES1 | cds-NP_001257689.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000021.1:3875-4444:- | gene-YNL140C_JAY291 | rna-NM_001270760.1_JAY291 | cds-NP_001257689.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:360714-361283:- | gene-YNL140C_MUCL30387 | rna-NM_001270760.1_MUCL30387 | cds-NP_001257689.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:395831-396400:- | gene-YNL140C_MUCL30388 | rna-NM_001270760.1_MUCL30388 | cds-NP_001257689.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:352501-353070:- | gene-YNL140C_MUCL39482 | rna-NM_001270760.1_MUCL39482 | cds-NP_001257689.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:355496-356065:- | gene-YNL140C_MUCL42920 | rna-NM_001270760.1_MUCL42920 | cds-NP_001257689.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:360886-361455:- | gene-YNL140C_NCIM3186 | rna-NM_001270760.1_NCIM3186 | cds-NP_001257689.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:354633-355202:- | gene-YNL140C_NCYC1407 | rna-NM_001270760.1_NCYC1407 | cds-NP_001257689.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:351632-352201:- | gene-YNL140C_PE2H3 | rna-NM_001270760.1_PE2H3 | cds-NP_001257689.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:351020-351589:- | gene-YNL140C_PE2H4 | rna-NM_001270760.1_PE2H4 | cds-NP_001257689.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:360917-361486:- | gene-YNL140C_S288C | rna-NM_001270760.1_S288C | cds-NP_001257689.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:52027-52596:+ | gene-YNL140C_SA1 | rna-NM_001270760.1_SA1 | cds-NP_001257689.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:348349-348918:- | gene-YNL140C_ThermosaccDry | rna-NM_001270760.1_ThermosaccDry | cds-NP_001257689.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:367012-367581:- | gene-YNL140C_VR1 | rna-NM_001270760.1_VR1 | cds-NP_001257689.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:258183-258752:- | gene-YNL140C_ZTW1 | rna-NM_001270760.1_ZTW1 | cds-NP_001257689.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:359141-359710:- | gene-YNL140C_Sparadoxus | rna-NM_001270760.1_Sparadoxus | cds-NP_001257689.1_Sparadoxus | 87.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |