Gene name: YNL054W-A
Reference locus (S288C): YNL054W-A
Gene biotype: protein_coding
Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag
Top 10 interactors (score): Unknown
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:92421-92954:- | gene-YNL054W-A_CBS6413 | rna-NM_001184413.3_CBS6413 | cds-NP_058180.1_CBS6413 | 38.2 | 40.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:520127-520747:+ | gene-YNL054W-A_NCIM3186 | rna-NM_001184413.3_NCIM3186 | cds-NP_058180.1_NCIM3186 | 46.9 | 46.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:554418-555740:+ | gene-YNL054W-A_PE2H3 | rna-NM_001184413.3_PE2H3 | cds-NP_058180.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:519456-520778:+ | gene-YNL054W-A_S288C | rna-NM_001184413.3_S288C | cds-NP_058180.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |