YNL054W-A (YNL054W-A)

Gene profile

Gene name: YNL054W-A
Reference locus (S288C): YNL054W-A
Gene biotype: protein_coding

Description: Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
CBS6413 GCA_001738265.1 Sake Asia CM005324.1:92421-92954:- gene-YNL054W-A_CBS6413 rna-NM_001184413.3_CBS6413 cds-NP_058180.1_CBS6413 38.2 40.3 Mismatch 1 1 0 False False True False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011823.1:520127-520747:+ gene-YNL054W-A_NCIM3186 rna-NM_001184413.3_NCIM3186 cds-NP_058180.1_NCIM3186 46.9 46.9 Mismatch 1 1 0 False False True False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:554418-555740:+ gene-YNL054W-A_PE2H3 rna-NM_001184413.3_PE2H3 cds-NP_058180.1_PE2H3 99.9 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001146.8:519456-520778:+ gene-YNL054W-A_S288C rna-NM_001184413.3_S288C cds-NP_058180.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False

Additional files