Gene name: YNL040W
Reference locus (S288C): YNL040W
Gene biotype: protein_coding
Description: Putative alanyl-tRNA editing protein alaX; Protein of unknown function; has strong similarity to alanyl-tRNA synthases from Eubacteria; null mutant displays decreased translation rate and increased readthrough of premature stop codons; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene
Top 10 interactors (score): BSC2 (0.942); OLA1 (0.897); GDB1 (0.668); RPT2 (0.643); MAP2 (0.586); YDR341C (0.479); MSR1 (0.479); DRS1 (0.477); MSF1 (0.403)
Homologues (species, bitscore): AARSD1 (Homo sapiens, 171.0); Aarsd1 (Mus musculus, 167.5); aarsd1 (Danio rerio, 149.4); aarsd1 (Xenopus tropicalis, 146.0); CG10802 (Drosophila melanogaster, 141.4); EMB1030 (Arabidopsis thaliana, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:540838-542208:+ | gene-YNL040W_AKU4011 | rna-NM_001182879.3_AKU4011 | cds-NP_014358.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:444786-446156:+ | gene-YNL040W_BG1 | rna-NM_001182879.3_BG1 | cds-NP_014358.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:558991-560361:+ | gene-YNL040W_Bruggeman | rna-NM_001182879.3_Bruggeman | cds-NP_014358.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:594519-595889:+ | gene-YNL040W_CAT1 | rna-NM_001182879.3_CAT1 | cds-NP_014358.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:541508-542878:+ | gene-YNL040W_CBS1585 | rna-NM_001182879.3_CBS1585 | cds-NP_014358.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:609746-611116:+ | gene-YNL040W_CBS436 | rna-NM_001182879.3_CBS436 | cds-NP_014358.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:536601-537971:+ | gene-YNL040W_CBS6412 | rna-NM_001182879.3_CBS6412 | cds-NP_014358.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:537919-539289:+ | gene-YNL040W_CBS6413 | rna-NM_001182879.3_CBS6413 | cds-NP_014358.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:546966-548336:+ | gene-YNL040W_CENPK1137D | rna-NM_001182879.3_CENPK1137D | cds-NP_014358.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:543651-545021:+ | gene-YNL040W_EthanolRed | rna-NM_001182879.3_EthanolRed | cds-NP_014358.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:534434-535804:+ | gene-YNL040W_FaliES1 | rna-NM_001182879.3_FaliES1 | cds-NP_014358.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:49219-50589:+ | gene-YNL040W_JAY291 | rna-NM_001182879.3_JAY291 | cds-NP_014358.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:555205-556575:+ | gene-YNL040W_MUCL30387 | rna-NM_001182879.3_MUCL30387 | cds-NP_014358.3_MUCL30387 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:583964-585334:+ | gene-YNL040W_MUCL30388 | rna-NM_001182879.3_MUCL30388 | cds-NP_014358.3_MUCL30388 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:538925-540295:+ | gene-YNL040W_MUCL39482 | rna-NM_001182879.3_MUCL39482 | cds-NP_014358.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:542988-544358:+ | gene-YNL040W_MUCL42920 | rna-NM_001182879.3_MUCL42920 | cds-NP_014358.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:553349-554719:+ | gene-YNL040W_NCIM3186 | rna-NM_001182879.3_NCIM3186 | cds-NP_014358.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:540976-542346:+ | gene-YNL040W_NCYC1407 | rna-NM_001182879.3_NCYC1407 | cds-NP_014358.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:544136-545506:+ | gene-YNL040W_PE2H3 | rna-NM_001182879.3_PE2H3 | cds-NP_014358.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:539211-540581:+ | gene-YNL040W_PE2H4 | rna-NM_001182879.3_PE2H4 | cds-NP_014358.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:553380-554750:+ | gene-YNL040W_S288C | rna-NM_001182879.3_S288C | cds-NP_014358.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:132061-133431:+ | gene-YNL040W_SA1 | rna-NM_001182879.3_SA1 | cds-NP_014358.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:535060-536430:+ | gene-YNL040W_ThermosaccDry | rna-NM_001182879.3_ThermosaccDry | cds-NP_014358.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:554097-555467:+ | gene-YNL040W_VR1 | rna-NM_001182879.3_VR1 | cds-NP_014358.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:444382-445751:+ | gene-YNL040W_ZTW1 | rna-NM_001182879.3_ZTW1 | cds-NP_014358.3_ZTW1 | 99.7 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:550030-551400:+ | gene-YNL040W_Sparadoxus | rna-NM_001182879.3_Sparadoxus | cds-NP_014358.3_Sparadoxus | 86.8 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |