Gene name: YNL035C
Reference locus (S288C): YNL035C
Gene biotype: protein_coding
Description: Uncharacterized WD repeat-containing protein YNL035C; Nuclear protein of unknown function; relocalizes to the cytosol in response to hypoxia; contains WD-40 domains; not an essential gene; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): PWP2 (0.956); YTM1 (0.896); RRS1 (0.896); NSA1 (0.892); YDR262W (0.85); UTP15 (0.801); IMP4 (0.767); EXG2 (0.744); DBP8 (0.687); ZIM17 (0.661); DIP2 (0.657); ROK1 (0.656); RPF2 (0.65); MAK5 (0.649); PUF6 (0.647); HCA4 (0.645); NOP56 (0.645); UTP7 (0.644); RRP15 (0.644); RPA43 (0.643)
Homologues (species, bitscore): WDR89 (Homo sapiens, 84.0); Wdr89 (Mus musculus, 93.6); WDR89 (Danio rerio, 66.6); wdr89 (Xenopus tropicalis, 77.8); CG12134 (Drosophila melanogaster, 65.9); AT2G47790 (Arabidopsis thaliana, 73.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:550997-552166:- | gene-YNL035C_AKU4011 | rna-NM_001182874.1_AKU4011 | cds-NP_014363.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:453961-455130:- | gene-YNL035C_BG1 | rna-NM_001182874.1_BG1 | cds-NP_014363.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:567824-568993:- | gene-YNL035C_Bruggeman | rna-NM_001182874.1_Bruggeman | cds-NP_014363.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:603854-605023:- | gene-YNL035C_CAT1 | rna-NM_001182874.1_CAT1 | cds-NP_014363.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:556673-557842:- | gene-YNL035C_CBS1585 | rna-NM_001182874.1_CBS1585 | cds-NP_014363.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:619079-620248:- | gene-YNL035C_CBS436 | rna-NM_001182874.1_CBS436 | cds-NP_014363.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:546264-547433:- | gene-YNL035C_CBS6412 | rna-NM_001182874.1_CBS6412 | cds-NP_014363.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:547584-548753:- | gene-YNL035C_CBS6413 | rna-NM_001182874.1_CBS6413 | cds-NP_014363.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:562110-563279:- | gene-YNL035C_CENPK1137D | rna-NM_001182874.1_CENPK1137D | cds-NP_014363.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:552828-553997:- | gene-YNL035C_EthanolRed | rna-NM_001182874.1_EthanolRed | cds-NP_014363.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:543611-544780:- | gene-YNL035C_FaliES1 | rna-NM_001182874.1_FaliES1 | cds-NP_014363.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000333.1:514-1683:- | gene-YNL035C_JAY291 | rna-NM_001182874.1_JAY291 | cds-NP_014363.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:564290-565459:- | gene-YNL035C_MUCL30387 | rna-NM_001182874.1_MUCL30387 | cds-NP_014363.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:593046-594215:- | gene-YNL035C_MUCL30388 | rna-NM_001182874.1_MUCL30388 | cds-NP_014363.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:548275-549444:- | gene-YNL035C_MUCL39482 | rna-NM_001182874.1_MUCL39482 | cds-NP_014363.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:551823-552992:- | gene-YNL035C_MUCL42920 | rna-NM_001182874.1_MUCL42920 | cds-NP_014363.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:568491-569660:- | gene-YNL035C_NCIM3186 | rna-NM_001182874.1_NCIM3186 | cds-NP_014363.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:550482-551651:- | gene-YNL035C_NCYC1407 | rna-NM_001182874.1_NCYC1407 | cds-NP_014363.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:552963-554132:- | gene-YNL035C_PE2H3 | rna-NM_001182874.1_PE2H3 | cds-NP_014363.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:554305-555474:- | gene-YNL035C_PE2H4 | rna-NM_001182874.1_PE2H4 | cds-NP_014363.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:568522-569691:- | gene-YNL035C_S288C | rna-NM_001182874.1_S288C | cds-NP_014363.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:140886-142055:- | gene-YNL035C_SA1 | rna-NM_001182874.1_SA1 | cds-NP_014363.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:544237-545406:- | gene-YNL035C_ThermosaccDry | rna-NM_001182874.1_ThermosaccDry | cds-NP_014363.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:562924-564093:- | gene-YNL035C_VR1 | rna-NM_001182874.1_VR1 | cds-NP_014363.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:453559-454728:- | gene-YNL035C_ZTW1 | rna-NM_001182874.1_ZTW1 | cds-NP_014363.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:559965-561134:- | gene-YNL035C_Sparadoxus | rna-NM_001182874.1_Sparadoxus | cds-NP_014363.1_Sparadoxus | 88.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |