YNCD0004W (YNCD0004W)

Gene profile

Gene name: YNCD0004W
Reference locus (S288C): YNCD0004W
Gene biotype: tRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:396460-396532:+ gene-YNCD0004W_AKU4011 rna-YNCD0004W_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000102.1:153341-153413:- gene-YNCD0004W_BG1 rna-YNCD0004W_BG1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:416962-417034:+ gene-YNCD0004W_3_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 4 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005510.1:141846-141918:- gene-YNCD0004W_1_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 2 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:753383-753455:- gene-YNCD0004W_2_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 3 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005518.1:891366-891438:+ gene-YNCD0004W_4_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 5 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:415878-415950:+ gene-YNCD0004W_Bruggeman rna-YNCD0004W_Bruggeman Unknown 100.0 100.0 Unannotated 5 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:409920-409992:+ gene-YNCD0004W_3_CAT1 Unknown Unknown 100.0 100.0 Unannotated 4 4 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000038.1:521-593:+ gene-YNCD0004W_1_CAT1 Unknown Unknown 100.0 100.0 Unannotated 4 2 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000338.1:302-374:- gene-YNCD0004W_2_CAT1 Unknown Unknown 100.0 100.0 Unannotated 4 3 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000167.1:665-737:+ gene-YNCD0004W_CAT1 rna-YNCD0004W_CAT1 Unknown 100.0 100.0 Unannotated 4 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:392872-392944:+ gene-YNCD0004W_CBS1585 rna-YNCD0004W_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005346.1:410403-410475:+ gene-YNCD0004W_CBS436 rna-YNCD0004W_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:412636-412708:+ gene-YNCD0004W_CBS6413 rna-YNCD0004W_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:409240-409312:+ gene-YNCD0004W_CENPK1137D rna-YNCD0004W_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:405291-405363:+ gene-YNCD0004W_EthanolRed rna-YNCD0004W_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:411483-411555:+ gene-YNCD0004W_FaliES1 rna-YNCD0004W_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000370.1:26028-26100:+ gene-YNCD0004W_JAY291 rna-YNCD0004W_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005413.1:755626-755698:+ gene-YNCD0004W_1_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 4 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:640325-640397:- gene-YNCD0004W_3_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 4 4 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:747217-747289:- gene-YNCD0004W_2_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 4 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:410851-410923:+ gene-YNCD0004W_MUCL30387 rna-YNCD0004W_MUCL30387 Unknown 100.0 100.0 Unannotated 4 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:401374-401446:+ gene-YNCD0004W_2_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 4 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:755145-755217:- gene-YNCD0004W_3_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 4 4 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000299.1:28-100:- gene-YNCD0004W_1_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 4 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000137.1:420-492:- gene-YNCD0004W_MUCL30388 rna-YNCD0004W_MUCL30388 Unknown 100.0 100.0 Unannotated 4 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:394546-394618:+ gene-YNCD0004W_MUCL39482 rna-YNCD0004W_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005429.1:761518-761590:+ gene-YNCD0004W_2_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 8 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005432.1:196267-196339:- gene-YNCD0004W_4_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 8 5 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005432.1:196838-196910:- gene-YNCD0004W_6_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 8 7 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005438.1:871843-871915:+ gene-YNCD0004W_3_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 8 4 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000001.1:340-412:+ gene-YNCD0004W_1_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 8 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000035.1:342-414:+ gene-YNCD0004W_7_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 8 8 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000301.1:146-218:- gene-YNCD0004W_5_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 8 6 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:316427-316499:+ gene-YNCD0004W_MUCL42920 rna-YNCD0004W_MUCL42920 Unknown 100.0 100.0 Unannotated 8 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:410302-410374:+ gene-YNCD0004W_NCIM3186 rna-YNCD0004W_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005270.1:133806-133878:- gene-YNCD0004W_1_NCYC1407 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000015.1:359-431:+ gene-YNCD0004W_2_NCYC1407 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:393968-394040:+ gene-YNCD0004W_NCYC1407 rna-YNCD0004W_NCYC1407 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:401510-401582:+ gene-YNCD0004W_PE2H3 rna-YNCD0004W_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:400868-400940:+ gene-YNCD0004W_PE2H4 rna-YNCD0004W_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:410379-410451:+ gene-YNCD0004W_S288C rna-YNCD0004W_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000010.1:24477-24549:- gene-YNCD0004W_SA1 rna-YNCD0004W_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:410943-411015:+ gene-YNCD0004W_ThermosaccDry rna-YNCD0004W_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:414006-414078:+ gene-YNCD0004W_1_VR1 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:641538-641610:- gene-YNCD0004W_2_VR1 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000212.1:451-523:- gene-YNCD0004W_VR1 rna-YNCD0004W_VR1 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000006.1:408843-408915:+ gene-YNCD0004W_ZTW1 rna-YNCD0004W_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:412881-412953:+ gene-YNCD0004W_Sparadoxus rna-YNCD0004W_Sparadoxus Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files