YNCC0005W (YNCC0005W)

Gene profile

Gene name: YNCC0005W
Reference locus (S288C): YNCC0005W
Gene biotype: tRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005297.1:122094-122167:+ gene-YNCC0005W_AKU4011 rna-YNCC0005W_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000032.1:1734-1807:+ gene-YNCC0005W_1_BG1 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000178.1:23840-23913:- gene-YNCC0005W_BG1 rna-YNCC0005W_BG1 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005516.1:106314-106387:+ gene-YNCC0005W_1_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005517.1:214903-214976:+ gene-YNCC0005W_2_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005505.1:117903-117976:+ gene-YNCC0005W_Bruggeman rna-YNCC0005W_Bruggeman Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005532.1:109326-109399:+ gene-YNCC0005W_1_CAT1 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005532.1:109575-109648:+ gene-YNCC0005W_2_CAT1 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005521.1:128299-128372:+ gene-YNCC0005W_CAT1 rna-YNCC0005W_CAT1 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005361.1:122743-122816:+ gene-YNCC0005W_CBS1585 rna-YNCC0005W_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005345.1:127999-128072:+ gene-YNCC0005W_CBS436 rna-YNCC0005W_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005329.1:110203-110276:+ gene-YNCC0005W_CBS6412 rna-YNCC0005W_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005313.1:122050-122123:+ gene-YNCC0005W_CBS6413 rna-YNCC0005W_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001524.1:133197-133270:+ gene-YNCC0005W_CENPK1137D rna-YNCC0005W_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005473.1:120112-120185:+ gene-YNCC0005W_EthanolRed rna-YNCC0005W_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005537.1:122410-122483:+ gene-YNCC0005W_FaliES1 rna-YNCC0005W_FaliES1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000126.1:36579-36652:+ gene-YNCC0005W_JAY291 rna-YNCC0005W_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005420.1:101367-101440:+ gene-YNCC0005W_1_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000216.1:328-401:+ gene-YNCC0005W_2_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005409.1:115706-115779:+ gene-YNCC0005W_MUCL30387 rna-YNCC0005W_MUCL30387 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:963807-963880:- gene-YNCC0005W_2_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 4 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005452.1:99670-99743:+ gene-YNCC0005W_3_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 4 4 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005454.1:797248-797321:+ gene-YNCC0005W_1_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 4 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005441.1:114677-114750:+ gene-YNCC0005W_MUCL30388 rna-YNCC0005W_MUCL30388 Unknown 100.0 100.0 Unannotated 4 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005281.1:123160-123233:+ gene-YNCC0005W_MUCL39482 rna-YNCC0005W_MUCL39482 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005436.1:96660-96733:+ gene-YNCC0005W_1_MUCL42920 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005425.1:118395-118468:+ gene-YNCC0005W_MUCL42920 rna-YNCC0005W_MUCL42920 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011812.1:127348-127421:+ gene-YNCC0005W_NCIM3186 rna-YNCC0005W_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005265.1:123643-123716:+ gene-YNCC0005W_NCYC1407 rna-YNCC0005W_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994142.1:127838-127911:+ gene-YNCC0005W_PE2H3 rna-YNCC0005W_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999874.1:127775-127848:+ gene-YNCC0005W_PE2H4 rna-YNCC0005W_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001135.5:127716-127789:+ gene-YNCC0005W_S288C rna-YNCC0005W_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000073.1:23879-23952:- gene-YNCC0005W_SA1 rna-YNCC0005W_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005493.1:721977-722050:+ gene-YNCC0005W_1_ThermosaccDry Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005502.1:777600-777673:+ gene-YNCC0005W_2_ThermosaccDry Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005489.1:122978-123051:+ gene-YNCC0005W_ThermosaccDry rna-YNCC0005W_ThermosaccDry Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005461.1:824409-824482:+ gene-YNCC0005W_4_VR1 Unknown Unknown 100.0 100.0 Unannotated 5 5 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005468.1:108642-108715:+ gene-YNCC0005W_2_VR1 Unknown Unknown 100.0 100.0 Unannotated 5 3 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005470.1:799422-799495:+ gene-YNCC0005W_3_VR1 Unknown Unknown 100.0 100.0 Unannotated 5 4 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000199.1:120-193:- gene-YNCC0005W_1_VR1 Unknown Unknown 100.0 100.0 Unannotated 5 2 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005457.1:133650-133723:+ gene-YNCC0005W_VR1 rna-YNCC0005W_VR1 Unknown 100.0 100.0 Unannotated 5 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000004.1:121915-121988:+ gene-YNCC0005W_ZTW1 rna-YNCC0005W_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047489.1:154047-154120:+ gene-YNCC0005W_Sparadoxus rna-YNCC0005W_Sparadoxus Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files