YNCA0006C (YNCA0006C)

Gene profile

Gene name: YNCA0006C
Reference locus (S288C): YNCA0006C
Gene biotype: tRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005295.1:162020-162101:- gene-YNCA0006C_AKU4011 rna-YNCA0006C_AKU4011 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000011.1:345310-345391:- gene-YNCA0006C_1_BG1 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000138.1:2-83:+ gene-YNCA0006C_BG1 rna-YNCA0006C_BG1 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005504.1:216159-216240:+ gene-YNCA0006C_1_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 2 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000049.1:459-540:- gene-YNCA0006C_2_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 3 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000060.1:304-385:- gene-YNCA0006C_3_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 4 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000101.1:23-104:- gene-YNCA0006C_4_Bruggeman Unknown Unknown 100.0 100.0 Unannotated 5 5 0 Unknown Unknown non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005503.1:178666-178747:- gene-YNCA0006C_Bruggeman rna-YNCA0006C_Bruggeman Unknown 100.0 100.0 Unannotated 5 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005519.1:166286-166367:- gene-YNCA0006C_3_CAT1 Unknown Unknown 100.0 100.0 Unannotated 5 4 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005520.1:218443-218524:+ gene-YNCA0006C_4_CAT1 Unknown Unknown 100.0 100.0 Unannotated 5 5 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005528.1:513915-513996:- gene-YNCA0006C_1_CAT1 Unknown Unknown 100.0 100.0 Unannotated 5 2 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000304.1:150-231:- gene-YNCA0006C_2_CAT1 Unknown Unknown 100.0 100.0 Unannotated 5 3 0 Unknown Unknown non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005519.1:165510-165591:- gene-YNCA0006C_CAT1 rna-YNCA0006C_CAT1 Unknown 100.0 100.0 Unannotated 5 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005359.1:174719-174800:- gene-YNCA0006C_CBS1585 rna-YNCA0006C_CBS1585 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005343.1:175382-175463:- gene-YNCA0006C_CBS436 rna-YNCA0006C_CBS436 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:787461-787542:- gene-YNCA0006C_CBS6412 rna-YNCA0006C_CBS6412 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005311.1:172984-173065:- gene-YNCA0006C_CBS6413 rna-YNCA0006C_CBS6413 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001522.1:182435-182516:- gene-YNCA0006C_CENPK1137D rna-YNCA0006C_CENPK1137D Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005471.1:162578-162659:- gene-YNCA0006C_EthanolRed rna-YNCA0006C_EthanolRed Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005535.1:178710-178791:- gene-YNCA0006C_FaliES1 rna-YNCA0006C_FaliES1 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005535.1:179307-179388:- gene-YNCA0006C_1_FaliES1 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000091.1:127-208:+ gene-YNCA0006C_JAY291 rna-YNCA0006C_JAY291 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005408.1:216516-216597:+ gene-YNCA0006C_1_MUCL30387 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005407.1:182158-182239:- gene-YNCA0006C_MUCL30387 rna-YNCA0006C_MUCL30387 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:216456-216537:+ gene-YNCA0006C_2_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000242.1:255-336:+ gene-YNCA0006C_1_MUCL30388 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005439.1:178678-178759:- gene-YNCA0006C_MUCL30388 rna-YNCA0006C_MUCL30388 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005279.1:173972-174053:- gene-YNCA0006C_MUCL39482 rna-YNCA0006C_MUCL39482 Unknown 100.0 100.0 Unannotated 3 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005280.1:207481-207562:+ gene-YNCA0006C_1_MUCL39482 Unknown Unknown 100.0 100.0 Unannotated 3 2 0 Unknown Unknown non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:421358-421439:+ gene-YNCA0006C_2_MUCL39482 Unknown Unknown 100.0 100.0 Unannotated 3 3 0 Unknown Unknown non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005424.1:214925-215006:+ gene-YNCA0006C_MUCL42920 rna-YNCA0006C_MUCL42920 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011810.1:182399-182480:- gene-YNCA0006C_NCIM3186 rna-YNCA0006C_NCIM3186 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005263.1:162105-162186:- gene-YNCA0006C_NCYC1407 rna-YNCA0006C_NCYC1407 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994140.1:169907-169988:- gene-YNCA0006C_PE2H3 rna-YNCA0006C_PE2H3 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999872.1:169626-169707:- gene-YNCA0006C_PE2H4 rna-YNCA0006C_PE2H4 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001133.9:182522-182603:- gene-YNCA0006C_S288C rna-YNCA0006C_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000099.1:34119-34200:- gene-YNCA0006C_SA1 rna-YNCA0006C_SA1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005487.1:177247-177328:- gene-YNCA0006C_ThermosaccDry rna-YNCA0006C_ThermosaccDry Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:212160-212241:+ gene-YNCA0006C_1_VR1 Unknown Unknown 100.0 100.0 Unannotated 2 2 0 Unknown Unknown non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005455.1:186727-186808:- gene-YNCA0006C_VR1 rna-YNCA0006C_VR1 Unknown 100.0 100.0 Unannotated 2 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000002.1:149398-149479:- gene-YNCA0006C_ZTW1 rna-YNCA0006C_ZTW1 Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047488.1:241793-241874:+ gene-YNCA0006C_Sparadoxus rna-YNCA0006C_Sparadoxus Unknown 98.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files